(* corresponding authorship; + co-first authorship.)

Publications after joining ZJU:

• Caroline Marie Teresa Neumann, Lena Lindtoft Rosenbæk, Rasmus Kock Flygaard, Michael Habeck, Jesper Lykkegaard Karlsen, Yong Wang, Kresten Lindorff-Larsen, Hans Henrik Gad, Rune Hartmann, Joseph Lyons, Robert A. Fenton, Poul Nissen*, Cryo-EM structure of the human NKCC1 transporter reveals mechanisms of ion coupling and specificity. biorxiv, (2021)

• Yong Wang*, Joseph A Lyons, Milena Timcenko, Bert L. de Groot, Poul Nissen, Vytautas Gapsys, Kresten Lindorff-Larsen*, Computational Studies of Substrate Transport and Specificity in a Phospholipid Flippase. biorxiv,  (2021)

• Xiakun Chu*, Yong Wang*, Pengfei Tian*, Wenfei Li*, Davide Mercadante*. Editorial: Advanced Sampling and Modeling in Molecular Simulations for Slow and Large-Scale Biomolecular Dynamics. Frontiers in Molecular Biosciences. (2021)

Selected Publications:

• Kaituo Wang+, Robert Dagil+, Thomas Lavstsen, Sandeep K. Misra, Charlotte B. Spliid, Yong Wang, Tobias Gustavsson, Daniel R. Sandoval, Elena Ethel Vidal-Calvo, Swati Choudhary, Mette Ø Agerbaek, Kresten Lindorff-Larsen, Morten A. Nielsen, Thor G. Theander, Joshua S. Sharp, Thomas Mandel Clausen, Pontus Gourdon*, Ali Salanti*. Cryo-EM reveals the architecture of placental malaria VAR2CSA and provides molecular insight into chondroitin sulfate binding. Nature Communications, 12, 2956, (2021)

• Noah Kassem+, Raul Araya-Secchi+, Katrine Bugge, Abigail Barclay, Helena Steinocher, Adree Khondker, Aneta J. Lenard, Jochen Bu ̈rck, Anne S. Ulrich, Martin C. Pedersen, Yong Wang, Maikel C. Rheinst ̈adter, Per Amstrup Pedersen, Kresten Lindorff-Larsen*, Lise Arleth*, Birthe B. Kragelund*, Order and disorder–an integrative structure of the full-length human growth hormone receptor. Science Advances, 7, eabh3805, (2021)

• Dennis V. Pedersen, Martin Nors Pedersen, Sofia M.M. Mazarakis, Yong Wang, Kresten Lindorff-Larsen, Lise Arleth, Gregers R. Andersen*. Properdin oligomers adopt a defined spatial structure supporting function. eLife, (2021)

• Stefan Hervo-Hansen, Casper Hojgaard, Kristoffer E Johansson, Yong Wang, Khadija Wahni, David Young, Joris Messens, Kaare Teilum, Kresten Lindorff- Larsen, Jakob R Winther, Charge Interactions in a Highly Charge-depleted Protein. JACS, (2021)

• Giulio Tesei, Joao M. Martins, Micha B. A. Kunze, Yong Wang, Ramon Crehuet, Kresten Lindorff-Larsen*, DEER-PREdict: Software for Efficient Calculation of Spin-Labeling EPR and NMR Data from Conformational Ensembles. PLoS Comput. Biol., (2021)

• Iva Sucec, Yong Wang*, Ons Dakhlaoui, Katharina Weinha ̈upl, Tobias Jores, Doriane Costa, Audrey Hessel, Martha Brennich, Doron Rapaport, Kresten Lindorff-Larsen, Beate Bersch*, Paul Schanda*, Structural basis of client specificity in mitochondrial membrane-protein chaperones. Science Advances, 6, eabd0263, (2020)

•   Andreas Haahr Larsen, Yong Wang, Sandro Battaro, Sergei Grudinin, Lise Arleth, Kresten Lindorff-Larsen*. Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution.  PLoS Comput. Biol., 16(4):  e1007870, (2020)

•   Anne Kathrine Nielsen, Ingvar R. M¨oller, Yong Wang, Søren G. F. Rasmussen, Kresten Lindorff-Larsen, Kasper D. Rand, Claus J. Loland*, Substrate-induced conformational dynamics of the dopamine transporter. Nature Communications, 10(1), 2714 (2019).

•   Martin Cramer Pedersen*, Yong Wang, Frederik Grønbæk Tidemand, Anne Martel, Kresten Lindorff-Larsen, Lise Arleth. PSX: Protein-Solvent Exchange - Software for calculation of deuterium-exchange effects in SANS measurements from protein coordinates.  J. Appl.  Cryst., 52, 1427-1436, (2019).

•   Katharina Weinha¨upl, Caroline Lindau, Audrey Hessel, Yong Wang, Conny Schu¨tze, Tobias Jores, Hubert Kalbacher, Doron Rapaport, Martha Brennich, Kresten Lindorff-Larsen, Nils Wiedemann and Paul Schanda*. Structural Basis of Membrane Protein Chaperoning Through the Mitochondrial Intermembrane Space. Cell, 175, 1365-1379, (2018) (Cover Image). 

Highlighted by local media Freiburg Uni. press and ESRF press and F10000Prime Recommendation

•  Yong Wang+, Pengfei Tian+, Wouter Boomsma, Kresten Lindorff-Larsen*, Monte Carlo Sampling of Protein Folding Energy Landscape by Hybrid Physics- based and Structure-based Models. J Phys. Chem. B, 122 (49), 11174–11185, (2018)

This article is the William A. Eaton Festschrift special issue.

•   Yong  Wang, Omar Valsson, Pratyush Tiwary, Michele Parrinello, Kresten Lindorff-Larsen*, Frequency Adaptive Metadynamics for the Calculation of Rare-event Kinetics.  J Chem.  Phys., 149(7), 072309 (2018).

•   Yong Wang, Katrine Bugge, Birthe B. Kragelund and Kresten Lindorff- Larsen*, Role of Protein Dynamics in Transmembrane Receptor Signalling. Curr. Opin.  Struct.  Biol. 48, 74-82, (2018). (Review paper)

•   Yong Wang, Joao Martins, Kresten Lindorff-Larsen*, Biomolecular Conformational Changes and Ligand Binding: from Kinetics to Thermodynamics. Chem.  Sci. 8, 6466-6473 (2017).

•   Yong Wang, Elena Papaleo, Kresten Lindorff-Larsen*, Mapping Transiently Formed and Sparsely Populated Conformations on a Complex Energy Landscape. eLife 5, e17505 (2016).

•   Pengfei Tian,  Wouter Boomsma,  Yong Wang,  Daniel E. Otzen,  Mogens H. Jensen, Kresten Lindorff-Larsen*, Structure of a Functional Amyloid Protein Subunit Computed Using Sequence Variation. JACS 137(1), 22-25 (2015).

•   Yong Wang, Xiakun Chu, and Jin Wang*, Multi-scale Simulation of Large-scale Conformational Change of Disordered and Ordered Proteins Induced by Their Partners. Chapter 9 in Computational Approaches to Protein Dynamics: From Quantum to Coarse-Grained Methods.  (2015) Book chapter.

•   Yong Wang, Chun Tang, Erkang Wang, and Jin Wang*, PolyUbiquitin Chain Linkage Topology Selects the Functions from the Underlying Binding Landscape. PLoS Comput. Biol. 10(7), e1003691 (2014).

•   Yong Wang, Sonia  Longhi, Philippe Roche, and Jin Wang*, Dual quantifications of intrinsically disordered proteins by NMR ensembles and molecular dynamics simulations. PNAS 111(16), E1559-E1559, 2014. (Reply letter)

•   Yong Wang, Xiakun Chu, Sonia Longhi, Philippe Roche, Wei Han, Erkang Wang, and Jin Wang*, Multiscaled exploration of coupled folding and binding of an intrinsically disordered molecular recognition element in measles virus nucleoprotein. PNAS 110(40), E3743-E3752, 2013.

•   Yong Wang, Linfeng Gan, Erkang Wang*, and Jin Wang*, Exploring the Dynamic Functional Landscape of Adenylate Kinase Modulated by Substrates. J. Chem.  Theo. Comput. 9(1), 84-95 (2013).

•   Yong Wang, Xiakun Chu, Zucai Suo, Erkang Wang, and Jin Wang*, 

Multidomain Protein Solves the Folding Problem by Multifunnel Combined Landscape: Theoretical Investigation of a Y-Family DNA Polymerase. JACS 134(33), 13755-13764 (2012).

•   Yong Wang, Chun  Tang, Erkang  Wang*, and  Jin  Wang*, Exploration of Multi-State Conformational Dynamics and Underlying Global Functional Landscape of Maltose Binding Protein.  PLoS Comput.  Biol.  8, e1002471 (2012).