通讯作者文章
Year |
No |
Articles |
2024 |
9 |
Zhiyu Liu, Yuwei Yang, Yunfei Bai, Qinyu Ge. Determination of Cell-Free DNA (cfDNA) Methylation by Methylation-Sensitive High-Resolution Melting (MS-HRM) in Human Plasma for the Diagnosis of Gestational Diabetes Mellitus (GDM). Analytical Letters. 2024. https://doi.org/10.1080/00032719.2024.2399182. |
8 |
Ying Zhou, Kun Bi, Qinyu Ge*, Zuhong Lu. Advances and Challenges in Random Access Techniques for In VitroDNA Data Storage. ACS Appl. Mater. Interfaces. 2024, https://doi.org/10.1021/acsami.4c07235. |
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7 |
Yanting Shen, Xiawei Fei, Junyan Xu, Rui Yang*, Qinyu Ge*, Zhong Wang*. Performance analysis of markers for prostate cell typing in single-cell data. Gene & Disease, 2024,11,101157. https://doi.org/10.1016/j.gendis.2023.101157. |
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6 |
Min Pan, Huajuan Shi, Ting Qi, Lingbo Cai*, Qinyu Ge*. The biological characteristics of long cell-free DNA in spent embryos culture medium as noninvasive biomarker in in-vitro embryo selection. Gene. 2024. 927 (2024) 148667. https://doi.org/10.1016/j.gene.2024.148667. |
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5 |
Ying Zhou, Yuwei Yang, Ting Qi, Zhuoran Hou, Qinyu Ge*, and Zuhong Lu. Transcriptome Study of rd1Mouse Brain and Association with Parkinson’s Disease. ACS Omega. 2024, 9, 24, 25756-25765.. https://doi.org/10.1021/acsomega.3c09938. |
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4 |
Ying Zhou, Ting Qi, Yuwei Yang, Zhiyu Liu, Zhuoran Hou, Xiangwei Zhao, Qinyu Ge*, Zuhong Lu. Effect of Different Staining Methods on Brain Cryosections. ACS Chem.Neurosci. 2024, 15, 2243−2252. https://doi.org/10.1021/acschemneuro.4c00069. |
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3 |
Ting Qi, Ying Zhou, Yuqing Sheng, Zhiyu Liu, Yuwei Yang, Qunajun Liu, Qinyu Ge*. Prediction of Transcription Factor Binding Sites on Cell-Free DNA Based on Deep Learning. J.Chem. Inf. Model. 2024, 64, 4002−4008. https://doi.org/10.1021/acs.jcim.4c00047. |
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2 |
Zhiyu Liu, Tinglan Ouyang, Yuwei Yang, Yuqi Sheng, Huajuan Shi, Quanjun Liu, Yunfei Bai, Qinyu Ge*. The Impact of Blood Sample Processing on Ribonucleic Acid (RNA) Sequencing. Genes. 2024, 15, 502. https://doi.org/10.3390/genes15040502. |
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1 |
Huajuan Shi, Qinyu Ge*, Min Pan, Yuqi Sheng, Ting Qi, Ying Zhou, Yuqing Sun, Yunfei Bai, Lingbo Cai*. Agarose amplification based sequencing characterization cell-free RNA in preimplantation spent embryo medium. Analytica Chimica Acta. 2024, 342331 https://doi.org//10.1016/j.aca.2024.342331. |
Year |
No |
Articles |
2023 |
9 |
Zhou Y, Sheng YQ, Pan M, Tu J, Zhao XW, Ge QY*. Spatial Transcriptomic Analysis Reveals Regional Transcript Changes in Early and Late Stages of rd1 Model Mice with Retinitis Pigmentosa. Int. J. Mol. Sci. 2023, 24, 14869. https://doi.org/10.3390/ijms241914869. |
8 |
Zhou Y, Qi T, Pan M, Tu J, Zhao XW, Ge QY*. Deep-Cloud: A Deep Neural Network-Based Approach for Analyzing Differentially Expressed Genes of RNA-seq Data. J. Chem. Inf. Model. 2023. https://pubs.acs.org/doi/10.1021/acs.jcim.3c00766. |
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7 |
Sun YQ，Liu ZY, Fu Y, Yang YW, Lu JR, Pan M, Wen T, Xie XY, Bai YF, Ge QY*. Single-cell multi-omics sequencing and its application in tumor heterogeneity. Briefings in Functional Genomics,2023 elad009, https://doi.org/10.1093/bfgp/elad009. |
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6 |
Sheng YQ, Wu JS, Li XM, Qiu JY, Li J, Ge QY*, Cheng L*, Han JW*. iATMEcell: identification of abnormal tumor microenvironment cells to predict the clinical outcomes in cancer based on cell–cell crosstalk network. Briefings in Bioinformatics, 2023, 1–13. https://doi.org/10.1093/bib/bbad074. |
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5 |
Lu Junru, Sheng Yuqi, Qian Weiheng, Pan Min, Zhao Xiangwei, Ge Qinyu*, scRNA‐seqdataanalysismethodto improve analysisperformance. IET Nanobiotechnol. 1–11(2023). https://doi.org/10.1049/nbt2.12115 |
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4 |
Erteng Jia, Yuqi Sheng, Huajuan Shi, Ying Wang, Ying Zhou, Zhiyu Liu, Ting Qi, Min Pan,Yunfei Bai, Xiangwei Zhao,* and Qinyu Ge*,Spatial Transcriptome Profiling of Mouse Hippocampal Single Cell Microzone in Parkinson’s Disease. Int. J. Mol. Sci. 2023, 24, 1810. https://doi.org/10.3390/ijms2403181. |
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3 |
Huajuan Shi, Min Pan, Erteng Jia, Wenxiang Lu, Ying Zhou, Yuqi Sheng, Xiangwei Zhao, Lingbo Cai* and Qinyu Ge*. A comprehensive characterization of cell-free RNA in spent blastocyst medium and quality prediction for blastocyst. Clinical Science. 2023, 00 1-14. https://doi.org/10.1042/CS20220495 |
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2 |
Ting Qi, Min Pan, Huajuan Shi, Liangying Wang, Yunfei Bai and Qinyu Ge*. Cell-Free DNA Fragmentomics: The Novel Promising Biomarker. Int. J. Mol. Sci. 2023, 24, 1503. https://doi.org/10.3390/ijms24021503 |
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1 |
Yuwei Yang, Zhiyu Liu, Junru Lu, Yuqing Sun, Yue Fu, Min Pan, Xueying Xie & Qinyu Ge*. Analysis approaches for the identification and prediction of N6-methyladenosine sites. Epigenetics. 2023, https://doi.org/10.1080/15592294.2022.2158284. |
Year |
No |
Articles |
2022 |
3 |
Shi Huajuan, Pan Min, Sheng Yuqi Jia Erteng Wang Ying, Dong Juan Tu Jing Bai Yunfei, Cai Lingbo* & Ge Qinyu*. Extracellular cell-free RNA profile in human large follicles and small follicles. Front. Cell Dev. Biol. 10:940336. doi: 10.3389/fcell.2022.940336 |
2 |
Ying Zhou, Erteng Jia , Huajuan Shi, Zhiyu Liu, Yuqi Sheng, Min Pan, Jing Tu, Qinyu Ge,* and Zuhong Lu. Prediction of Time-Series Transcriptomic Gene Expression Based on Long Short-Term Memory with Empirical Mode Decomposition. Int. J. Mol. Sci. 2022, 23, 7532. https://doi.org/10.3390/ijms23147532 |
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1 |
Ying Zhou, Erteng Jia, ……Xiangwei Zhao*, Qinyu Ge*, Zuhong Lu. Sensitive and Low-Bias Transcriptome Sequencing Using Agarose PCR. ACS Applied Materials & Interfaces. 2022, 14, 19154-19167. https://doi.org/10.1021/acsami.2c02133. |
Year |
No |
Articles |
2021 |
7 |
Shi HJ; Zhou Y; Jia ET;……Ge QY*. Comparative analysis of circular RNA enrichment methods. RNA Biology, 2021, https://doi.org/10.1080/15476286.2021.2012632 |
6 |
Pan M; Shi HJ; LiuZY;……Cai LB*; Ge QY*. The integrity of cfDNA in follicular fuid and spent medium from embryo culture is associated with embryo grade in patients undergoing in vitro fertilization. Journal of Assisted Reproduction and Genetics, 2021, https://doi.org/10.1007/s10815-021-02357-0 |
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5 |
Jia ET; Shi HJ; Wang Y; Zhou Y; …Ge QY*. Optimization of library preparation based on SMART for ultralow RNA-seq in mice brain tissues. BMC Genomics, 2021, 22: 809. doi: 10.1186/s12864-021-08132-w. |
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4 |
Pan, M; Lu, JF; Liu, ZY;…Ge QY*. Integrity of cfDNA in maternal plasma extracellular vesicles as a potential biomarker for NIPT. Int J Gynaecol Obstet. 2021. doi: 10.1002/ijgo.13976 |
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3 |
Zhou, Y; Jia, ET; Qiao, Y; Shi, HJ; Liu, ZY; Pan, M; Zhao, XW; Bai, YF; Ge, QY*. Low bias multiple displacement amplification with confinement effect based on agarose gel. ANALYTICAL AND BIOANALYTICAL CHEMISTRY. 2021, 413: 4397_4405. 10.1007/s00216-021-03415-3 |
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2 |
Shi, HJ; Zhou, Y; Jia, ET; Pan, M; Bai, YF; Ge, QY*. Bias in RNA-seq Library Preparation: Current Challenges and Solutions. BIOMED RESEARCH INTERNATIONAL.2021, 2021: 6647597. 10.1155/2021/6647597 |
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1 |
Jia, ET; Zhou, Y; Shi, HJ; Pan, M; Zhao, XW; Ge, QY*. Effects of brain tissue section processing and storage time on gene expression. ANALYTICA CHIMICA ACTA. 2021, 1142: 38_47. 10.1016/j.aca.2020.10.046 |
Year |
No |
Articles |
2020 |
6 |
Wang, LJ; Wang, J; Jia, ET; Liu, ZY; Ge, QY*; Zhao, XW*. Plasma RNA sequencing of extracellular RNAs reveals potential biomarkers for non-small cell lung cancer. CLINICAL BIOCHEMISTRY. 2020, 83: 65_73. 10.1016/j.clinbiochem.2020.06.004 |
5 |
Jia, ET; Pan, M; Liu, ZY; Zhou, Y; Zhao, XW; Dong, J; Bai, YF; Ge, QY*. Transcriptomic profiling of differentially expressed genes and related pathways in different brain regions in Parkinson's disease. NEUROSCIENCE LETTERS. 2020, 732: 135074. 10.1016/j.neulet.2020.135074 |
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4 |
Pan, M; Chen, PS; Lu, JF; Liu, ZY; Jia, ER; Ge, QY*. The fragmentation patterns of maternal plasma cell-free DNA and its applications in non-invasive prenatal testing. PRENATAL DIAGNOSIS. 2020, 40: 911_917. 10.1002/pd.5680 |
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3 |
Jia, ET; Zhou, Y; Liu, ZY; Wang, LJ; Ouyang, TL; Pan, M; Bai, YF; Ge, QY*. Transcriptomic Profiling of Circular RNA in Different Brain Regions of Parkinson's Disease in a Mouse Model. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2020, 21: 3006. 10.3390/ijms21083006 |
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2 |
Bai, YF; Wang, ZX; Liu, ZY; Liang, GY; Gu, WJ; Ge, QY*. Technical progress in circulating tumor DNA analysis using next-generation sequencing. MOLECULAR AND CELLULAR PROBES. 2020, 49: 101480. 10.1016/j.mcp.2019.101480 |
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1 |
Zhou, Y; Jia, ET; Pan, M; Zhao, XW; Ge, QY*. Encoding Method of Single-cell Spatial Transcriptomics Sequencing. INTERNATIONAL JOURNAL OF BIOLOGICAL SCIENCES. 2020, 16: 2663_2674. 10.7150/ijbs.43887 |
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2019 |
6 |
Zhou, Y; Ge, QY*; Wu, ZF; Meng, XM. Observation of rhegmatogenous retinal detachment associated with choroidal detachment after vitrectomy by optical coherence tomography angiography. IMAGING SCIENCE JOURNAL. 2019, 67: 447_452. 10.1080/13682199.2020.1714114 |
5 |
Liu, ZY; Wang, ZX; Jia, ET; Ouyang, TL; Pan, M; Lu, JF; Ge, QY*; Bai, YF. Analysis of genome-wide in cell-free DNA methylation: progress and prospect. ANALYST. 2019, 144: 5912_5922. 10.1039/c9an00935c |
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4 |
Jia, ET; Liu, ZY; Pan, M; Lu, JF; Ge, QY*. Regulation of bile acid metabolism-related signaling pathways by gut microbiota in diseases. JOURNAL OF ZHEJIANG UNIVERSITY-SCIENCE B. 2019, 20: 781_792. 10.1631/jzus.B1900073 |
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3 |
Tian, F; Wang, J; Ouyang, TL; Lu, N; Lu, JF; Shen, YT; Bai, YF; Xie, XY; Ge, QY*. MiR-486-5p Serves as a Good Biomarker in Nonsmall Cell Lung Cancer and Suppresses Cell Growth With the Involvement of a Target PIK3R1. FRONTIERS IN GENETICS. 2019, 10: 688. 10.3389/fgene.2019.00688 |
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2 |
Ouyang, TL; Liu, ZY; Han, ZY; Ge, QY*. MicroRNA Detection Specificity: Recent Advances and Future Perspective. ANALYTICAL CHEMISTRY. 2019, 91: 3179_3186. 10.1021/acs.analchem.8b05909 |
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1 |
Shen, YT; Bu, L; Li, R; Chen, ZZ; Tian, F; Ge, QY*. Expression And Biological Interaction Network Of RHOC For Hepatic Carcinoma With Metastasis In PBMC Samples. ONCOTARGETS AND THERAPY. 2019, 12: 9117_9128. 10.2147/OTT.S222235 |
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2018 |
2 |
Chen, ZZ; Zhang, JY; Li, R; Tian, F; Shen, YT; Xie, XY; Ge, QY*; Lu, ZH. Metatranscriptomics analysis of cyanobacterial aggregates during cyanobacterial bloom period in Lake Taihu, China. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH. 2018, 25: 4811_4825. 10.1007/s11356-017-0733-4 |
1 |
Shen, YT; Li, R; Tian, F; Chen, ZZ; Lu, N; Bai, YF; Ge, QY*; Lu, ZH. Impact of RNA integrity and blood sample storage conditions on the gene expression analysis. ONCOTARGETS AND THERAPY. 2018, 11: 3573_3581. 10.2147/OTT.S158868 |
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2017 |
3 |
Shen, YT; Tian, F; Tu, J; Li, R; Chen, ZZ; Bai, YF; Ge, QY*; Lu, ZH. Construction and optimization of an efficient breathing-based isothermal emulsion amplification method. ANALYTICA CHIMICA ACTA. 2017, 973: 43_50. 10.1016/j.aca.2017.03.045 |
2 |
Shen, YT; Bu, L; Li, R; Chen, ZZ; Tian, F; Lu, N; Ge, QY; Bai, YF; Lu, ZH. Screening effective differential expression genes for hepatic carcinoma with metastasis in the peripheral blood mononuclear cells by RNA-seq. ONCOTARGET. 2017, 8: 27976_27989. 10.18632/oncotarget.15855 |
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1 |
Tian, F; Shen, YT; Chen, ZZ; Li, R; Ge, QY*. No Significant Difference between Plasma miRNAs and Plasma-Derived Exosomal miRNAs from Healthy People. BIOMED RESEARCH INTERNATIONAL. 2017, 2017: 1304816. 10.1155/2017/1304816 |
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2016 |
3 |
Tian, F; Shen, YT; Chen, ZZ; Li, R; Lu, JF; Ge, QY*. Aberrant miR-181b-5p and miR-486-5p expression in serum and tissue of non-small cell lung cancer. GENE. 2016, 591: 338_343. 10.1016/j.gene.2016.06.014 |
2 |
Lu, JF; Yang, Q; Li, HL; Ge, QY*; Zhou, YX; Lu, ZH. Placenta-Specific Circulating MircoRNAs and Their Variants as Potential Biomarkers for Preeclampsia. JOURNAL OF NANOSCIENCE AND NANOTECHNOLOGY. 2016, 16: 7013_7017. 10.1166/jnn.2016.11304 |
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1 |
Tian, F; Li, R; Chen, ZZ; Shen, YT; Lu, JF; Xie, XY; Ge, QY*. Differentially Expressed miRNAs in Tumor, Adjacent, and Normal Tissues of Lung Adenocarcinoma. BIOMED RESEARCH INTERNATIONAL. 2016, 2016: 1428271. 10.1155/2016/1428271 |
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2015 |
4 |
Lu, JF; Zhang, XL; Zhang, R; Ge, QY*. MicroRNA heterogeneity in endometrial cancer cell lines revealed by deep sequencing. ONCOLOGY LETTERS. 2015, 10: 3457_3465. 10.3892/ol.2015.3776 |
3 |
Shen, YT; Tian, F; Chen, ZZ; Li, R; Ge, QY*; Lu, ZH*. Amplification-based method for microRNA detection. BIOSENSORS & BIOELECTRONICS. 2015, 71: 322_331. 10.1016/j.bios.2015.04.057 |
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2 |
Zhu, YN; Tian, F; Li, HL; Zhou, YX; Lu, JF; Ge, QY*. Profiling maternal plasma microRNA expression in early pregnancy to predict gestational diabetes mellitus. INTERNATIONAL JOURNAL OF GYNECOLOGY & OBSTETRICS. 2015, 130: 49_53. 10.1016/j.ijgo.2015.01.010 |
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1 |
Qiu, JL; Kang, XJ*; Ma, L; Huang, WY; Ge, QY*. Preparation and application of poly 3, 4-ethylenedioxythiophene (PEDOT) nanofibers in the pretreatment of samples before the determination of elements in children fingernails. 2015 GLOBAL CONFERENCE ON POLYMER AND COMPOSITE MATERIALS (PCM2015). 2015, 87: 12093. 10.1088/1757-899X/87/1/012093 |
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2013 |
2 |
Wu, Q; Wang, C; Guo, L; Ge, QY*; Lu, ZH*. Identification and characterization of novel microRNA candidates from deep sequencing. CLINICA CHIMICA ACTA. 2013, 415: 239_244. 10.1016/j.cca.2012.11.002 |
1 |
Li, HL; Ge, QY*; Guo, L; Lu, ZH*. Maternal Plasma miRNAs Expression in Preeclamptic Pregnancies. BIOMED RESEARCH INTERNATIONAL. 2013, 2013: 970265. 10.1155/2013/970265 |
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2012 |
3 |
Wu, Q; Wang, C; Lu, ZH*; Guo, L; Ge, QY*. Analysis of serum genome-wide microRNAs for breast cancer detection. CLINICA CHIMICA ACTA. 2012, 413: 1058_1065. 10.1016/j.cca.2012.02.016 |
2 |
Pan, M; Ge, QY*; Li, HL; Yang, Q; Lu, JF; Zhang, DD; Lu, ZH. Sequencing the MiRNAs in Maternal Plasma from Women Before and After Parturition. JOURNAL OF NANOSCIENCE AND NANOTECHNOLOGY. 2012, 12: 4035_4043. 10.1166/jnn.2012.6196 |
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1 |
Li, HL; Guo, L; Wu, Q; Lu, JF; Ge, QY*; Lu, ZH*. A comprehensive survey of maternal plasma miRNAs expression profiles using high-throughput sequencing. CLINICA CHIMICA ACTA. 2012, 413: 568_576. 10.1016/j.cca.2011.11.026 |
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2011 |
3 |
Yang, Q; Lu, JF; Wang, SQ; Li, HL; Ge, QY*; Lu, ZH*. Application of next-generation sequencing technology to profile the circulating microRNAs in the serum of preeclampsia versus normal pregnant women. CLINICA CHIMICA ACTA. 2011, 412: 2167_2173. 10.1016/j.cca.2011.07.029 |
2 |
Wang, Y; Lu, JF; Yang, Q; Bai, YF; Ge, QY*. An Emulsion Based Microarray Method to Detect the Toxin Genes of Toxin-Producing Organisms. MOLECULES. 2011, 16: 7365_7376. 10.3390/molecules16097365 |
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1 |
Wu, Q; Lu, ZH; Li, HL; Lu, JF; Guo, L; Ge, Q*. Next-Generation Sequencing of MicroRNAs for Breast Cancer Detection. JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY. 2011, : 597145. 10.1155/2011/597145 |
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2008 |
3 |
Wu, ZX; Luo, JF; Ge, QY*; Lu, ZH*. Microarray-based Ms-SNuPE: Near-quantitative analysis for a high-throughput DNA methylation. BIOSENSORS & BIOELECTRONICS. 2008, 23: 1333_1339. 10.1016/j.bios.2007.11.018 |
2 |
Shi, H; Yu, PF; Ge, QY*; Lu, ZH*. Microarray-Based Method to Analyze DNA Methylation of Maternal Plasma in Pregnant Women. MBE 2008: ASIA -PACIFIC CONFERENCE ON MIND BRAIN AND EDUCATION. 2008, : 295_298. |
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1 |
Yu, PF; Shi, H; Ge, QY*; Lu, ZH*. Detection of MaoA promoter alleles in buccal cell DNA by PCR-based method. MBE 2008: ASIA -PACIFIC CONFERENCE ON MIND BRAIN AND EDUCATION. 2008, : 275_278. |
合作文章（主要合作者东南大学白云飞教授、东南大学赵祥伟教授、东南大学葛峥教授、江苏省人民医院王俊教授）
Year |
No |
Articles |
2021 |
1 |
Zhu, CM; Zhang, JY; Wang, X; Yang, YQ; Chen, N; Lu, ZH; Ge, QY; Jiang, R; Zhang, XG; Yang, YF; Chen, T. Responses of cyanobacterial aggregate microbial communities to algal blooms. WATER RESEARCH. 2021, 196: 117014. 10.1016/j.watres.2021.117014 |
Year |
No |
Articles |
2020 |
5 |
Bao, ZS; Zhang, B; Li, L; Ge, QY; Gu, WJ; Bai, YF. Identifying disease-associated signaling pathways through a novel effector gene analysis. PEERJ. 2020, 8: e9695. 10.7717/peerj.9695 |
4 |
Chen, RP; Du, X; Cui, YJ; Zhang, XY; Ge, QY; Dong, J; Zhao, XW. Vertical Flow Assay for Inflammatory Biomarkers Based on Nanofluidic Channel Array and SERS Nanotags. SMALL. 2020, 16: 2002801. 10.1002/smll.202002801 |
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3 |
Shen, P; Zhao, GH; Liu, YQ; Ge, QY; Sun, QJ. Liposomal Spherical Nucleic Acid Scaffolded Site-Selective Hybridization of Nanoparticles for Visual Detection of MicroRNAs. ACS APPLIED BIOMATERIALS. 2020, 3: 1656_1665. 10.1021/acsabm.9b01222 |
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2 |
Bao, ZS; Zhu, YH; Ge, QY; Gu, WJ; Dong, XJ; Bai, YF. Signaling Pathway Analysis Combined With the Strength Variations of Interactions Between Genes Under Different Conditions. IEEE ACCESS. 2020, 8: 138036_138045. 10.1109/ACCESS.2020.3010796 |
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1 |
Wang, YQ; Gu, WW; Qiu, YL; Wang, ZL; Guo, BY; Ge, QY. The interactions of dopamine D4 receptor and family cohesion or conflict on university students' prosocial tendency. CHINESE SCIENCE BULLETIN-CHINESE. 2020, 65: 2032_2046. 10.1360/TB-2020-0132 |
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2019 |
7 |
Gu, Y; Song, CH; Dovat, S; Guo, QL; Ge, QY; Ge, Z. Oncogenesis of CRLF2 Overexpression and Effect of JAK2 Inhibitor in CRLF2 Overexpressed B-Cell Acute Lymphoblastic Leukemia. BLOOD. 2019, 134: . 10.1182/blood-2019-125259 |
6 |
Zhu, CM; Zhang, JY; Guan, R; Hale, L; Chen, N; Li, M; Lu, ZH; Ge, QY; Yang, YF; Zhou, JZ; Chen, T. Alternate succession of aggregate-forming cyanobacterial genera correlated with their attached bacteria by co-pathways. SCIENCE OF THE TOTAL ENVIRONMENT. 2019, 688: 867_879. 10.1016/j.scitotenv.2019.06.150 |
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5 |
Chen, RP; Liu, B; Ni, HB; Chang, N; Luan, CX; Ge, QY; Dong, J; Zhao, XW. Vertical flow assays based on core-shell SERS nanotags for multiplex prostate cancer biomarker detection. ANALYST. 2019, 144: 4051_4059. 10.1039/c9an00733d |
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4 |
Duan, MQ; Chen, L; Ge, QY; Lu, N; Li, JJ; Pan, X; Qiao, Y; Tu, J; Lu, ZH. Evaluating heteroplasmic variations of the mitochondrial genome from whole-genome sequencing data. GENE. 2019, 699: 145_154. 10.1016/j.gene.2019.03.016 |
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3 |
Xie, X; Tu, J; Ge, QY; Lu, ZH; Sun, LT. Nanoscale Observation of Conformational Transformation of DNA Polymerase via In-Situ Liquid-Cell Transmission Electron Microscopy. JOURNAL OF BIOMEDICAL NANOTECHNOLOGY. 2019, 15: 1106_1111. 10.1166/jbn.2019.2740 |
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2 |
Bao, ZS; Zhu, YH; Ge, QY; Gu, WJ; Dong, XJ; Bai, YF. gwSPIA: Improved Signaling Pathway Impact Analysis With Gene Weights. IEEE ACCESS. 2019, 7: 69172_69183. 10.1109/ACCESS.2019.2918150 |
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1 |
Zhang, D; Huang, L; Liu, B; Ge, QY; Dong, J; Zhao, XW. Rapid and Ultrasensitive Quantification of Multiplex Respiratory Tract Infection Pathogen via Lateral Flow Microarray-based on SERS Nanotags. THERANOSTICS. 2019, 9: 4849_4859. 10.7150/thno.35824 |
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2018 |
2 |
Ge, Z; Han, Q; Gu, Y; Ge, QY; Ma, JL; Sloane, J; Gao, GF; Payne, KJ; Szekely, L; Song, CH; Dovat, S. Aberrant ARID5B expression and its association with Ikaros dysfunction in acute lymphoblastic leukemia. ONCOGENESIS. 2018, 7: 84. 10.1038/s41389-018-0095-x |
1 |
Li, JJ; Lu, N; Tao, YH; Duan, MQ; Qiao, Y; Xu, YM; Ge, QY; Bi, CW; Fu, JY; Tu, J; Lu, ZH. Accurate and sensitive single-cell-level detection of copy number variations by micro-channel multiple displacement amplification (mu cMDA). NANOSCALE. 2018, 10: 17933_17941. 10.1039/c8nr04917c |
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3 |
Ge, Z; Gu, Y; Han, Q; Sloane, J; Ge, QY; Gao, GF; Ma, J; Song, HH; Hu, JJ; Chen, BA; Dovat, S; Song, CH. Plant homeodomain finger protein 2 as a novel IKAROS target in acute lymphoblastic leukemia. EPIGENOMICS. 2018, 10: 59_69. 10.2217/epi-2017-0092 |
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4 |
Qian, ZQ; Liu, H; Li, MS; Shi, JC; Li, N; Zhang, Y; Zhang, XJ; Lv, JZ; Xie, XY; Bai, YF; Ge, QY; Ko, EA; Tang, HY; Wang, T; Wang, XJ; Wang, ZH; Zhou, T; Gu, WJ. Potential Diagnostic Power of Blood Circular RNA Expression in Active Pulmonary Tuberculosis. EBIOMEDICINE. 2018, 27: 18_26. 10.1016/j.ebiom.2017.12.007 |
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2017 |
3 |
Li, JJ; Shi, XL; Qiao, Y; Chen, L; Duan, MQ; Hou, Y; Ge, QY; Tao, YH; Tu, J; Lu, ZH. 1D-Reactor Decentralized MDA for Uniform and Accurate Whole Genome Amplification. ANALYTICAL CHEMISTRY. 2017, 89: 10147_10152. 10.1021/acs.analchem.7b02183 |
2 |
Zhang, JY; Zhu, CM; Guan, R; Xiong, ZP; Zhang, W; Shi, JZ; Sheng, Y; Zhu, BC; Tu, J; Ge, QY; Chen, T; Lu, ZH. Microbial profiles of a drinking water resource based on different 16S rRNA V regions during a heavy cyanobacterial bloom in Lake Taihu, China. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH. 2017, 24: 12796_12808. 10.1007/s11356-017-8693-2 |
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1 |
Ge, Z; Zhou, XL; Gu, Y; Han, Q; Li, JY; Chen, BA; Ge, QY; Dovat, E; Payne, JL; Sun, TY; Song, CH; Dovat, S. Ikaros regulation of the BCL6/BACH2 axis and its clinical relevance in acute lymphoblastic leukemia. ONCOTARGET. 2017, 8: 8022_8034. 10.18632/oncotarget.14038 |
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2016 |
1 |
Liu, YQ; Ye, MF; Ge, QY; Qu, XJ; Guo, QS; Hu, XY; Sun, QJ. Ratiometric Quantum Dot-Ligand System Made by Phase Transfer for Visual Detection of Double-Stranded DNA and Single-Nucleotide Polymorphism. ANALYTICAL CHEMISTRY. 2016, 88: 1768_1774. 10.1021/acs.analchem.5b04043 |
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2015 |
2 |
Yang, S; Li, HL; Ge, QY; Guo, L; Chen, F. Deregulated microRNA species in the plasma and placenta of patients with preeclampsia. MOLECULAR MEDICINE REPORTS. 2015, 12: 527_534. 10.3892/mmr.2015.3414 |
1 |
Wang, J; Li, Z; Ge, QY; Wu, WB; Zhu, Q; Luo, JH; Chen, L. Characterization of microRNA transcriptome in tumor, adjacent, and normal tissues of lung squamous cell carcinoma. JOURNAL OF THORACIC AND CARDIOVASCULAR SURGERY. 2015, 149: 1404. 10.1016/j.jtcvs.2015.02.012 |
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2014 |
2 |
Bai, YF; Xue, Y; Xie, XY; Yu, T; Zhu, YH; Ge, QY; Lu, ZH. The RNA expression signature of the HepG2 cell line as determined by the integrated analysis of miRNA and mRNA expression profiles. GENE. 2014, 548: 91_100. 10.1016/j.gene.2014.07.016 |
1 |
Zhu, K; Hu, XY; Ge, QY; Sun, QJ. Fluorescent recognition of deoxyribonucleic acids by a quantum dotimeso-tetrakis(N-methylpyridinium-4-yl)porphyrin complex based on a photoinduced electron-transfer mechanism. ANALYTICA CHIMICA ACTA. 2014, 812: 199_205. 10.1016/j.aca.2014.01.007 |
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2013 |
1 |
Yu, H; Shen, YT; Ge, QY; He, YJ; Qiao, DY; Ren, ML; Zhang, JQ. Quantification of Maternal Serum Cell-Free Fetal DNA in Early-Onset Preeclampsia. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2013, 14: 7571_7582. 10.3390/ijms14047571 |
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2012 |
3 |
Guo, L; Li, HL; Liang, TM; Lu, JF; Yang, Q; Ge, QY; Lu, ZH. Consistent isomiR expression patterns and 3' addition events in miRNA gene clusters and families implicate functional and evolutionary relationships. MOLECULAR BIOLOGY REPORTS. 2012, 39: 6699_6706. 10.1007/s11033-012-1493-3 |
2 |
Bai, YF; Han, Q; Lin, D; Luo, JF; Tu, J; Ge, QY; Lu, ZH. Structure-Function Relationships of Three Kinds of Immobilized DNA Probes in the Discrimination Abilities of Single Nucleotide Variation. JOURNAL OF NANOSCIENCE AND NANOTECHNOLOGY. 2012, 12: 1748_1753. 10.1166/jnn.2012.5183 |
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1 |
Guo, L; Li, HL; Lu, JF; Yang, Q; Ge, QY; Gu, WJ; Bai, YF; Lu, ZH. Tracking miRNA precursor metabolic products and processing sites through completely analyzing high-throughput sequencing data. MOLECULAR BIOLOGY REPORTS. 2012, 39: 2031_2038. 10.1007/s11033-011-0950-8 |
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2011 |
4 |
Bai, YF; Lin, D; Han, Q; Jia, YJ; Tu, J; Luo, JF; Ge, QY; Zhang, DD; Lu, ZH. Discrimination of Single Nucleotide Mutation by Using a New Class of Immobilized Shared-Stem Double-Stranded DNA Probes. JOURNAL OF BIOMEDICAL NANOTECHNOLOGY. 2011, 7: 640_647. 10.1166/jbn.2011.1327 |
3 |
Guo, L; Yang, Q; Lu, JF; Li, HL; Ge, QY; Gu, WJ; Bai, YF; Lu, ZH. A Comprehensive Survey of miRNA Repertoire and 3 ' Addition Events in the Placentas of Patients with Pre-Eclampsia from High-Throughput Sequencing. PLOS ONE. 2011, 6: e21072. 10.1371/journal.pone.0021072 |
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2 |
Li, ML; Ge, QY; Wang, W; Wang, JK; Lu, ZH. c-Jun binding site identification in K562 cells. JOURNAL OF GENETICS AND GENOMICS. 2011, 38: 235_242. 10.1016/j.jgg.2011.05.004 |
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1 |
Tu, J; Bai, YF; Ge, QY; Yang, Q; Lu, ZH. 2-Color Encoding Solid Phase Minisequencing. JOURNAL OF NANOSCIENCE AND NANOTECHNOLOGY. 2011, 11: 2305_2307. 10.1166/jnn.2011.3575 |
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2010 |
4 |
Wu, QA; Li, HL; Lu, JF; Ge, QY; Lu, ZH. Aberrant microRNA expression in the development of breast carcinoma. CHINESE SCIENCE BULLETIN. 2010, 55: 3517_3526. 10.1007/s11434-010-4022-6 |
3 |
Tang, C; Shi, XL; Wang, W; Zhou, DQ; Tu, J; Xie, XY; Ge, QY; Xiao, PF; Sun, XA; Lu, ZH. Global analysis of in vivo EGR1-binding sites in erythroleukemia cell using chromatin immunoprecipitation and massively parallel sequencing. ELECTROPHORESIS. 2010, 31: 2936_2943. 10.1002/elps.201000094 |
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2 |
Cheng, L; Sun, BL; Sun, Y; Xiao, PF; Ge, QY; Zheng, YZ; Ke, XY; Zhou, Y; Zhang, MH; Chen, P; Lu, ZH. Detection of Multiple SNPs in Numerous Samples with Polyacrylamide Gel-Based Microarray. JOURNAL OF NANOSCIENCE AND NANOTECHNOLOGY. 2010, 10: 479_486. 10.1166/jnn.2010.1727 |
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1 |
Wang, W; Zhou, DQ; Shi, XL; Tang, C; Xie, XY; Tu, J; Ge, QY; Lu, ZH. Global Egr1-miRNAs Binding Analysis in PMA-Induced K562 Cells Using ChIP-Seq. JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY. 2010, 867517. 10.1155/2010/867517 |
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2009 |
3 |
Cheng, L; Ge, QY; Sun, BL; Yu, PF; Ke, XY; Lu, ZH. Polyacrylamide Gel-based Microarray: A Novel Method Applied to the Association Study Between the Polymorphisms of BDNF Gene and Autism. JOURNAL OF BIOMEDICAL NANOTECHNOLOGY. 2009, 5: 542_550. 10.1166/jbn.2009.1058 |
2 |
Cheng, L; Ge, QY; Xiao, PF; Sun, BL; Ke, XY; Bai, YF; Lu, ZH. Association Study between BDNF Gene Polymorphisms and Autism by Three-Dimensional Gel-Based Microarray. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2009, 10: 2487_2500. 10.3390/ijms10062487 |
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1 |
Cheng, L; Ge, QY; Sun, BL; Xiao, PF; Ke, XY; Lu, ZH. Association Study between BDNF Gene Polymorphisms and Autism. 2009 THE REGIONAL WORKSHOP OF THE INTERNATIONAL SOCIETY FOR THE STUDY OF BEHAVIOURAL DEVELOPMENT (ISSBD): SOCIAL AND EMOTIONAL DEVELOPMENT IN CHANGING SOCIETIES. 2009, : 139_142. |
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2008 |
1 |
Zhang, DD; Wang, Y; Bai, YF; Ge, QY; Qiao, YJ; Luo, JF; Jia, C; Lu, ZH. A novel method to quantify local CpG methylation density by regional methylation elongation assay on microarray. BMC GENOMICS. 2008, 9: 59. 10.1186/1471-2164-9-59 |
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2007 |
2 |
Wu, ZX; Luo, JF; Ge, QY; Zhang, DD; Wang, Y; Jia, C; Lu, ZH. Allele-specific extension on microarray for DNA methylation analysis. ANALYTICA CHIMICA ACTA. 2007, 603: 199_204. 10.1016/j.aca.2007.09.027 |
1 |
Liu, QJ; Bai, YF; Ge, QY; Zhou, SX; Wen, T; Lu, ZH. Microarray-in-a-tube for detection of multiple viruses. CLINICAL CHEMISTRY. 2007, 53: 188_194. 10.1373/clinchem.2006.071720 |
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2006 |
2 |
Zhang, DD; Bai, YF; Ge, QY; Qiao, YJ; Wang, Y; Chen, ZZ; Lu, ZH. Microarray-based molecular margin methylation pattern analysis in colorectal carcinoma. ANALYTICAL BIOCHEMISTRY. 2006, 355: 117_124. 10.1016/j.ab.2006.04.048 |
1 |
Bai, YF; Ge, QY; Liu, QJ; Li, TX; Wang, JK; Lu, ZH. Evaluating the binding affinities of NF-kappa B protein to the single-nucleotide mismatch DNA binding sites by using double-stranded DNA microarray. JOURNAL OF NANOSCIENCE AND NANOTECHNOLOGY. 2006, 6: 1014_1018. 10.1166/jnn.2006.150 |
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2005 |
5 |
Liu, QJ; Qin, Z; Bai, YF; Ge, QY; Lu, ZH. Detection and analysis system for hybridization images of lab-in-a-tube microarray. CHINESE SCIENCE BULLETIN. 2005, 50: 2896_2900. 10.1360/982005-451 |
4 |
Bai, YF; Ge, QY; Liu, QJ; Li, TX; Wang, JK; Lu, ZH. A free-labeled method for DNA-binding protein detection using a double-stranded DNA microarray. JOURNAL OF NANOSCIENCE AND NANOTECHNOLOGY. 2005, 5: 1216_1219. 10.1166/jnn.2005.206 |
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3 |
Bai, YF; Ge, QY; Li, TX; Wang, JK; Liu, QJ; Lu, ZH. Endonuclease-based method for detecting the sequence-specific DNA binding protein on double-stranded DNA microarray. CHINESE CHEMICAL LETTERS. 2005, 16: 651_654. |
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2 |
Bai, YF; Ge, QY; Wang, JK; Li, TX; Liu, QJ; Lu, ZH. Optimization of on-chip elongation for fabricating double-stranded DNA microarrays. COLLOIDS AND SURFACES B-BIOINTERFACES. 2005, 40: 153_158. 10.1016/j.colsurfb.2004.10.019 |
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1 |
Bai, YF; Ge, QY; Wang, JK; Li, TX; Liu, QJ; Lu, ZH. Investigation of DNA-protein sequence-specific interactions with a ds-DNA array. MOLECULES. 2005, 10: 417_426. 10.3390/10020417 |
第一作者文章
12 |
Ge, QY; Shen, YT; Tian, F; Lu, JF; Bai, YF; Lu, ZH. Profiling circulating microRNAs in maternal serum and plasma. MOLECULAR MEDICINE REPORTS. 2015, 12: 3323_3330. 10.3892/mmr.2015.3879 |
11 |
Ge, QY; Zhu, YA; Li, HL; Tian, F; Xie, XY; Bai, YF. Differential expression of circulating miRNAs in maternal plasma in pregnancies with fetal macrosomia. INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE. 2015, 35: 81_91. 10.3892/ijmm.2014.1989 |
10 |
Ge, QY; Zhou, YX; Lu, JF; Bai, YF; Xie, XY; Lu, ZH. miRNA in Plasma Exosome is Stable under Different Storage Conditions. MOLECULES. 2014, 19: 1568_1575. 10.3390/molecules19021568 |
9 |
Ge, QY; Tian, F; Zhou, YX; Zhu, YA; Lu, JF; Bai, YF; Lu, ZH. A universal linker-RT PCR based quantitative method for the detection of circulating miRNAs. ANALYTICAL METHODS. 2014, 6: 9101_9107. 10.1039/c4ay01602e |
8 |
Tu, J; Ge, QY; Wang, SQ; Wang, L; Sun, BL; Yang, Q; Bai, YF; Lu, ZH. Pair-barcode high-throughput sequencing for large-scale multiplexed sample analysis. BMC GENOMICS. 2012, 13: 43. 10.1186/1471-2164-13-43 |
7 |
Ge, QY; Li, HL; Yang, Q; Lu, JF; Tu, J; Bai, YF; Lu, ZH. Sequencing circulating miRNA in maternal plasma with modified library preparation. CLINICA CHIMICA ACTA. 2011, 412: 1989_1994. 10.1016/j.cca.2011.07.010 |
6 |
Ge, QY; Yu, PF; Bai, YF; Lu, ZH. An Emulsion System Based on a Chip Polymerase Chain Reaction. MOLECULES. 2008, 13: 3057_3068. 10.3390/molecules13123057 |
5 |
Ge, QY; Bai, YF; Yu, PF; Lu, ZH. Microarray Based DNA Methylation Assay in Maternal Plasma of Pregnant Women. MBE 2008: ASIA -PACIFIC CONFERENCE ON MIND BRAIN AND EDUCATION. 2008, : 269_274. |
4 |
Ge, QY; Bai, YF; Zhang, DD; Lu, ZH. Microarray detection of fetal DNA levels in maternal plasma. ANALYTICAL LETTERS. 2007, 40: 1540_1548. 10.1080/00032710701380772 |
3 |
Ge, QY; Liu, ZB; Bai, YF; Zhang, DD; Yu, PF; Lu, ZH. Emulsion PCR-based method to detect Y chromosome microdeletions. ANALYTICAL BIOCHEMISTRY. 2007, 367: 173_178. 10.1016/j.ab.2007.05.008 |
2 |
Ge, QY; Bai, YF; Liu, ZB; Liu, QJ; Yan, L; Lu, ZH. Detection of fetal DNA in maternal plasma by microarray coupled with emulsions PCR. CLINICA CHIMICA ACTA. 2006, 369: 82_88. 10.1016/j.cca.2006.01.015 |
1 |
Ge, QY; Liu, QJ; Bai, YF; Wen, T; Lu, ZH. A semi-quantitative microarray method to detect fetal RNAs in maternal plasma. PRENATAL DIAGNOSIS. 2005, 25: 912_918. 10.1002/pd.1253 |