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成果及论文

一、代表性论文

  1. Zailong Tian#, Kun Li#, Yaru Sun#, Baojun Chen#, Zhaoe Pan, Zhenzhen Wang,Baoyin Pang a, Shoupu He*, Yuchen Miao*, Xiongming Du*. Physiological and transcriptional analyses reveal formation of memory under recurring drought stresses in seedlings of cotton (Gossypium hirsutum). Plant Science, 2024, 338:111920. https://www.sciencedirect.com/science/article/pii/S0168945223003370

  2. Tahir Mahmood, Shoupu He, Muhammad Abdullah, Muhammad Sajjad, Yinhua Jia,Sunny Ahmar, Guoyong Fu, Baojun Chen, Xiongming Du*. Epigenetic insight into floral transition and seed development in plants. Plant Science, 2024, 339:111926. https://www.sciencedirect.com/science/article/pii/S0168945223003436

  3. Zubair Iqbal, Muhammad Shahid Iqbal, Salman Alamery, Khurram Shehzad, Qamar U. Zaman, Safira Attacha, Zareen Sarfraz, Mian Faisal Nazir , Daowu Hu, Muhammad Mubashar Zafar , Aqib Zeb, Shoupuhe, Tahir Mahmood , Sajid Fiaz ,Alia Gul, Asmaa M. Abushady , Itoh Kimiko,, Kotb A. Attia, Zhaoe Pan, Xiongming Du*. Genome‑wide association study reveals novel genes on different chromosomal positions regulating boll weight in upland cotton (Gossypium hirsutum L.).  Genetic Resources and Crop Evolution, 2024, 71: 785–799. https://link.springer.com/article/10.1007/s10722-023-01657-x

  4. Guoyong Fu, Baojun Chen, Xinxin Pei, Xiaoyang Wang, Xiao Wang,Mian Faisal Nazir, Jingjing Wang, Xiaomeng Zhang, Aishuang Xing, Zhaoe Pan,Zhongxu Lin, Zhen Peng, Shoupu He*, Xiongming Du*.Genome-wide analysis of the serine carboxypeptidase-like protein family reveals Ga09G1039 is involved in fiber elongation in cotton. Plant Physiology and Biochemistry. 2023, 201: 107759. https://linkinghub.elsevier.com/retrieve/pii/S0981-9428(23)00270-X

  5. Mian Faisal Nazir, Baojun Chen, Muhammad Jawad Umer, Zareen Sarfraz, Zhen Peng, Shoupu He, Muhammad Shahid Iqbal, Jingjing Wang, Hongge Li, Zhaoe Pan, Daowu Hu, Meizhen Song, Xiongming Du*.Transcriptomic analysis reveals the beneficial effects of salt priming on enhancing defense responses in upland cotton under successive salt stress. Physiologia Plantarum, 2023, 175:e14074. https://onlinelibrary.wiley.com/doi/10.1111/ppl.14074?af=R

  6. Zhen Peng#, Abdul Rehman# , Xiawen Li, Xuran Jiang, Chunyan Tian, Xiaoyang Wang,Hongge Li, Zhenzhen Wang, Shoupu He* and Xiongming Du*. Comprehensive Evaluation and Transcriptome Analysis Reveal the Salt Tolerance Mechanism in Semi-Wild Cotton (Gossypium purpurascens). International Journal of Molecular Sciences, 2023, 24,12853. https://www.mdpi.com/1422-0067/24/16/12853

  7. Fenglei Sun, Yanlong Yang*, Penglong Wang, Jun Ma and Xiongming Du*. Quantitative trait loci and candidate genes for yield-related traits of upland cotton revealed by genome-wide association analysis under drought conditions. BMC Genomics, 2023, 24: 531. https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-023-09640-7

  8. Sani Muhammad Tajo, Zhaoe Pan, Yinhua Jia, Shoupu He, Baojun Chen, Salisu Bello Sadau, Yusuf KM,Aboleri Adijat Ajadi, Mian Faisal Nazir, Umar Auta, Xiaoli Geng* and Xiongming Du*. Silencing of GhORP_A02 enhances drought tolerance in Gossypium hirsutum. BMC Genomics, 2023, 24: 7.https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-022-09099-y

  9. TAJO Sani Muhammad, PAN Zhaoe, HE Shoupu, JIA Yinhua, MAHMOOD Tahir, NAZIR Mian Fasil,HU Daowu, WANG Liru, SADAU Salisu Bello, IBRAHIM Sani, AUTA Umar, GENG Xiaoli* and DU Xiongming*. Validating field regeneration capacity for selected accessions of Gossypium hirsutum using callus induction and regeneration capacity. Journal of Cotton Research, 2023,6: 9. https://jcottonres.biomedcentral.com/articles/10.1186/s42397-023-00146-x

  10. Zhenzhen Wang#, Abdul Rehman#, Yinhua Jia, Panhong Dai, Shoupu He, Xiaoyang Wang, Hongge Li, Liru Wang, Abdul Qayyum, Zhen Peng*, Xiongming Du*. Transcriptome and proteome profiling revealed the key genes and pathways involved in the fiber quality formation in brown cotton. Gene, 2023, 868:147374. https://www.sciencedirect.com/science/article/pii/S0378111923002159

  11. Xiaomeng Zhang# , Ruidan Dong#, Yaxi Xu, Xiongming Du*, Lei Ma*. Genome‑wide association study identifies GhF3'H affects the spiraeoside biosynthesis in waste cotton (Gossypium hirsutum L.) flowers. Industrial Crops & Products, 2023, 204: 117330. https://www.sciencedirect.com/science/article/pii/S0926669023010956

  12. Pengpeng Wang#, Maojun Wang#, Na Dong#, Gaofei Sun#, Yinhua Jia#, Xiaoli Geng，Min Liu, Weipeng Wang, Zhaoe Pan, Qiuyue Yang, Hongge Li, Chunyan Wei, LiruWang, Hongkun Zheng, Shoupu He*, Xianlong Zhang*, Qinglian Wang*, and XiongmingDu*. Introgression from Gossypium hirsutum is a driver for population divergence and genetic diversity in Gossypium barbadense.  Plant Journal. 2022, 110,764-780. https://onlinelibrary.wiley.com/doi/10.1111/tpj.15702

  13. Yingfei Liu, Mian Faisal Nazir, Shoupu He, Hongge Li, Zhaoe Pan1, Gaofei Sun, Panhong Dai, Liyuan Wang, Xiongming Du*. Deltapine 15 contributes to the genomic architecture of modern upland cotton cultivars. Theoretical and Applied Genetics. 2022, 135, 1401-1411. https://link.springer.com/article/10.1007/s00122-022-04042-x

  14. Zhenzhen Wang, Xiaomeng Zhang, Shoupu He, Abdul Rehman, Yinhua Jia,Hongge Li, Zhaoe Pan, Xiaoli Geng, Qiong Gao, Liru Wang, Zhen Peng* and Xiongming Du*. Transcriptome Co-expression Network and Metabolome Analysis Identifies Key Genes and Regulators of Proanthocyanidins Biosynthesis in Brown Cotton. Frontiers in Plant Science. 2022, 822198. https://www.frontiersin.org/articles/10.3389/fpls.2021.822198/full

  15. Sani Muhammad Tajo, Zhaoe Pan, Shoupu He, Baojun Chen, Yusuf KM, Tahir Mahmood, Salisu Bello Sadau, Muhammad Shahid Iqbal, Teame Gereziher, Umar Suleiman Abubakar, Masha Joseph, Tajo Sammani, Xiaoli Geng* and Xiongming Du*. Characterization of WOX genes revealed drought tolerance, callus induction, and tissue regeneration in Gossypium hirsutum. Frontiers in Genetics. 2022, 13, 928055. https://www.frontiersin.org/articles/10.3389/fgene.2022.928055/full

  16. HU Daowu, HE Shoupu, SUN Gaofei, JIA Yinhua, GENG Xiaoli, WANG Liru, PAN Zhaoe, CHEN Baojun, LI Hongge, ZUBAIR Iqbal, WANG Xiaoyang, ZHAO Zibo, GE Yuting, PANG Baoyin and DU Xiongming*. A genome-wide association study of lateral root number for Asian cotton (Gossypium arboreum L.). Journal of Cotton Research. 2022, 5, 19. https://jcottonres.biomedcentral.com/articles/10.1186/s42397-022-00126-7

  17. Daowu Hu#, Yuting Ge#, Yinhua Jia, Shoupu He, Xiaoli Geng, Liru Wang, Zhaoe Pan,Zubair Iqbal, Tahir Mahmood, Hongge Li, Baojun Chen, Xiaoyang Wang, Baoyin Pang and Xiongming Du*. Identification and Characterization of the Growth-Regulating Factors-Interacting Factors in Cotton. Frontiers in Genetics. 2022:3,1-12. https://www.frontiersin.org/articles/10.3389/fgene.2022.851343/full

  18. Daowu Hu, Shoupu He, Gaofei Sun, Yinhua Jia, Yonghong Su, Xiaojing Ma, Washu Dev. Mian Faisal Nazir, Xiaoli Geng, Liru Wang, Zhaoe Pan, Baojun Chen, Hongge Li, Xiaoyang Wang, Baoyin Pang, Xiongming Du*. Integrating Genome-wide association and whole transcriptome analysis to reveal genetic control of leaf traits in Gossypium arboreum L. Genomics, 2022, 114, 110331. https://www.sciencedirect.com/science/article/pii/S0888754322000763

  19. Daowu Hu, Shoupu He, Yinhua Jia, Mian Faisal Nazir, Gaofei Sun, Xiaoli Geng, Zhaoe Pan, Liru Wang, Baojun Chen, Hongge Li, Yuting Ge, Baoyin Pang and Xiongming Du*. Genome-wide association study for seedling biomass-related traits in Gossypium arboreum L. BMC Plant Biology. 2022, 22, 54. https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-022-03443-w

  20.  Zubair Iqbal, Daowu Hu, Wajad Nazeer, Hao Ge, Talha Nazir, Sajid Fiaz, Alia Gul,Muhammad Shahid Iqbal, Ahmed M. El-Sabrout, Zahra Maryum, Zhaoe Pan and Xiongming Du*. Phenotypic Correlation Analysis in F2 Segregating Populations. agronomy. 2022, 12, 330. https://www.mdpi.com/2073-4395/12/2/330

  21. Muhammad Shahid Iqbal#, Zareen Sarfraz#, Mian Faisal Nazir, Yinhua Jia, Zhaoe Pan, Tahir Mahmood, Liru Wang & Xiongming Du*. Genotype × Environment Interaction Analysis for Yield Stability of Hybrid Cotton Across Production Environments Through Multiple Biometrical Tools. Journal of Natural Fibers. 2022,19:17,15310-15326. https://www.tandfonline.com/doi/abs/10.1080/15440478.2022.2118202?journalCode=wjnf20

  22. Tahir Mahmood, Muhammad Shahid Iqbal, Guanjing Hu* and Xiongming Du*. Differential seedling growth and tolerance indices reflect drought tolerance in cotton. BMC Plant Biology. 2022,22:331. https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-022-03724-4

  23. Aishuang Xing, Xiaoyang Wang, Mian Faisal Nazir, Xiaomeng Zhang, Xiuxiu Wang, Ru Yang, Baojun Chen,Guoyong Fu, Jingjing Wang, Hao Ge, Zhen Peng, Yinhua Jia, Shoupu He* and Xiongming Du*. Transcriptomic and metabolomic profiling of flavonoid biosynthesis provides novel insights into petals coloration in Asian cotton (Gossypium arboreum L.). BMC Plant Biology. 2022, 22:416. https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-022-03800-9

  24. Chenhui Ma, Abdul Rehman, Hong Ge Li, Zi Bo Zhao, Gaofei Sun and Xiong Ming Du*.   Mapping of dwarfing QTL of Ari1327, a semi-dwarf mutant of upland cotton. BMC Plant Biology. 2022, 22:5. https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-021-03359-x

  25. Muhammad Shahid Iqbal#, Shurong Tang#, Zareen Sarfraz#, Muhammad Sajid Iqbal,Hongge Li, Shoupu He, Yinhua Jia, Gaofei Sun, Zhaoe Pan, Geng Xiaoli, Abid Mahmood, Saghir Ahmad, Mian Faisal Nazir, Baojun Chen, Liru Wang, Baoyin Pang, Shoujun Wei* and Xiongming Du*. Genetic Factors Underlying Single Fiber Quality in A-Genome Donor Asian Cotton (Gossypium arboreum). Frontiers in Genetics. 2021,12,758665.https://www.frontiersin.org/articles/10.3389/fgene.2021.758665/abstract

  26. Zhen Peng#, Hongge Li#, Gaofei Sun, Panhong Dai, Xiaoli Geng, Xiao Wang, Xiaomeng Zhang. Zhenzhen Wang, Yinhua Jia, Zhaoe Pan, Baojun Chen, Xiongming Du*, Shoupu He*. CottonGVD: a comprehensive genomic variation database for cultivated cottons. Frontiers in Plant Science. 2021, 12: 803736. https://www.frontiersin.org/articles/10.3389/fpls.2021.803736/abstract

  27. Zhen Peng#, Xuran Jiang#, Zhenzhen Wang, Xiaoyang Wang, Hongge Li, Shoupu He, Zhaoe Pan, Abdul Qayyum, Abdul Rehman* and Xiongming Du*.Identification of Raf-Like Kinases B Subfamily Genes in Gossypium Species Revealed GhRAF42 Enhanced Salt Tolerance in Cotton. International Journal of Molecular Sciences. 2021, 22, 12649. https://www.mdpi.com/1422-0067/22/23/12649/htm

  28. Baojun Chen#, Yaru Sun#, Zailong Tian, Guoyong Fu, Xinxin Pei, Zhaoe Pan, Mian Faisal Nazir, Song Song, Hongge Li, Xiaoyang Wang, Ning Qin, Jiandong Shang, Yuchen Miao, Shoupu He* & Xiongming Du* . GhGASA10–1 promotes the cell elongation in fiber development through the phytohormones IAA-induced. BMC Plant Biology 2021, 21: 448. https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-021-03230-z

  29. Tahir Mahmood, Xiukang Wang*, Sunny Ahmar, Muhammad Abdullah, Muhammad Shahid Iqbal, Rashid Mehmood Rana, Muhammad Yasir, Shiguftah Khalid, Talha Javed, Freddy Mora-Poblete, Jen-Tsung Chen, Muhammad Kausar Nawaz Shah and Xiongming Du*. Genetic Potential and Inheritance Pattern of Phenological Growth and Drought Tolerance in Cotton (Gossypium Hirsutum L.). Frontiers Plant Science 12:705392. https://www.frontiersin.org/articles/10.3389/fpls.2021.705392/full

  30. Pengpeng Wang, Shoupu He, Gaofei Sun, Zhaoe Pan, Junling Sun, Xiaoli Geng,Zhen Peng, Wenfang Gong, Liru Wang, Baoyin Pang, Yinhua Jia* & Xiongming Du*.Favorable pleiotropic loci for fiber yield and quality in upland cotton (Gossypium hirsutum).Scientific Reports. 2021,11: 15935. https://www.nature.com/articles/s41598-021-95629-9

  31. CHEN Baojun#, ZHAO Junjie#, FU Guoyong, PEI Xinxin, PAN Zhaoe, LI Hongge, AHMED Haris, HE Shoupu* and DU Xiongming*. Identification and expression analysis of Tubulin gene family in upland cotton.Journal of Cotton Research.2021.4: 20. https://jcottonres.biomedcentral.com/articles/10.1186/s42397-021-00097-1

  32. Abdul Rehman, Zhen Peng, Hongge Li, Guangyong Qin, Yinhua Jia, Zhaoe Pan, Shoupu He, Abdul Qayyum, Xiongming Du*. Genome wide analysis of IQD gene family in diploid and tetraploid species of cotton (Gossypium spp.). International Journal of Biological Macromolecules. 2021,184:1035-1061. https://www.sciencedirect.com/science/article/abs/pii/S0141813021013441

  33. Abdul Rehman#, Na Wang#, Zhen Peng*, Shoupu He, Zibo Zhao, Qiong Gao, Zhenzhen Wang, Hongge Li, Xiongming Du*.Identification of C2H2 subfamily ZAT genes in Gossypium species reveals GhZAT34 and GhZAT79 enhanced salt tolerance in Arabidopsis and cotton. International Journal of Biological Macromolecules. 2021,184:967-980. https://www.sciencedirect.com/science/article/pii/S0141813021013957.

  34. Xiao Wang#,  Tengfei Qin#,  Zhen Peng,  Yaxin Zhang, Qiuyue Yang, Xiaoli Geng, Haron Salih, Jialiang Sun, Shoupu He, Qinglian Wang*, Xiongming Du*.Genome-wide profiling of circular RNAs in the hybridization of two elite inbred lines of Gossypium hirsutum. Industrial Crops and Products. 2021,170:113754. https://www.sciencedirect.com/science/article/pii/S0926669021005185

  35. Mian Faisal Nazir#, Shoupu He#, Haris Ahmed, Zareen Sarfraz, Yinhua Jia, Hongge Li, Gaofei Sun, Muhammad Shahid Iqbal, Zhaoe Pan, Xiongming Du*. Genomic insight into the divergence and adaptive potential of a forgotten landrace G. hirsutum L. purpurascens. Journal of Genetics and Genomics, 2021, 48, 473-484. https://doi.org/10.1016/j.jgg.2021.04.009.

  36. Abdul Rehman#, Rana Muhammad Atif#*, Muhammad Tehseen Azhar. Zhen Peng, Hongge Li, Guangyong Qin, Yinhua Jia, Zhaoe Pan, Shoupu He, Abdul Qayyum, Xiongming Du*. Genome wide identification, classification and functional characterization of heat shock transcription factors in cultivated and ancestral cottons (Gossypium spp.).International Journal of Biological Macromolecules. 2021,182: 1507–1527. https://www.sciencedirect.com/science/article/abs/pii/S0141813021009855

  37. Abdul Rehman, Muhammad Tehseen Azhar, Lori Hinze, Abdul Qayyum, Hongge Li, Zhen Peng, Guangyong Qin, Yinhua Jia, Zhaoe Pan, Shoupu He & Xiongming Du*. Insight into abscisic acid perception and signaling to increase plant tolerance to abiotic stress. Journal of Plant Interactions. 202116: 222-237. https://www.tandfonline.com/doi/full/10.1080/17429145.2021.1925759

  38.  Zareen Sarfraz#, Muhammad Shahid Iqbal#, Xiaoli Geng, Muhammad Sajid Iqbal, Mian Faisal Nazir, Haris Ahmed, Shoupu He, Yinhua Jia, Zhaoe Pan, Gaofei Sun, Baoyin Pang, Liru Wang, Junling Sun* and Xiongming Du*. GWAS Mediated Elucidation of Heterosis for Metric Traits in Cotton (Gossypium hirsutum L.) Across Multiple Environments. Frontiers in Plant Science, 2021,12: 565552. https://www.frontiersin.org/articles/10.3389/fpls.2021.565552/full

  39. Shoupu He#, Gaofei Sun#, Xiaoli Geng#, Wenfang Gong#, Panhong Dai, Yinhua Jia, Weijun Shi, Zhaoe Pan, Junduo Wang, Liyuan Wang, Songhua Xiao, Baojun Chen, Shufang Cui, Chunyuan You, Zongming Xie, Feng Wang, Jie Sun, Guoyong Fu, Zhen Peng, Daowu Hu, Liru Wang, Baoyin Pang, Xiongming Du*. The genomic basis of geographic differentiation and fiber improvement in cultivated cotton. Nature Genetics, 2021.53:916-924. https://dx.doi.org/10.1038/s41588-021-00844-9

  40. Xinxin Pei, Xiaoyang Wang, Guoyong Fu, Baojun Chen, Mian Faisal Nazir, Zhaoe Pan, Shoupu He*, Xiongming Du*. Identification and functional analysis of 9-cis-epoxy carotenoid dioxygenase (NCED) homologs in G. hirsutum. International Journal of Biological Macromolecules. 2021,182, 298–310. https://www.sciencedirect.com/science/article/pii/S014181302100698X

  41. Zibo Zhao#, Daowu Hu#, Muhammad Tehseen Azhar, Hongge Li, Chenhui Ma, Shoupu He, Xiaoyang Wang, Gaofei Sun, Tahir Mahmood, Washu Dev, Xiongming Du*. Genome‑wide association and transcriptome analysis of root color‑related genes in Gossypium arboreum L. Planta, 2021. 253, 95. https://link.springer.com/article/10.1007%2Fs00425-021-03622-3

  42. RAZA Irum, HU Daowu, AHMAD Adeel, LI Hongge, HE Shoupu, NAZIR Mian Faisal, WANG Xiaoyang, JIA Yinhua, PAN Zhaoe, ZHANG Peng, YASIR Muhammad, IQBAL Muhammad Shahid, GENG Xiaoli, WANG Liru, PANG Baoyin and DU Xiongming*. Correlation analysis of stem hardness traits with fiber and yield-related traits in core collections of Gossypium hirsutum. Journal of Cotton Research, 2021. 4, 8. https://jcottonres.biomedcentral.com/articles/10.1186/s42397-021-00082-8
  43. Xiaoli Geng, Yujie Qu, Yinhua Jia, Shoupu He, Zhaoe Pan, Liru Wang and Xiongming Du*. Assessment of heterosis based on parental genetic distance estimated with SSR and SNP markers in upland cotton (Gossypium hirsutum L.). BMC Genomics, 2021. 22, 123. https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-021-07431-6
  44. Hongge Li#, Zhaoe Pan#, Shoupu, He, Yinhua, Jia, Xiaoli, Geng, Baojun, Chen, Liru Wang, Baoyin Pang& Xiongming Du*. QTL mapping of agronomic and economic traits for four F2 populations of upland cotton. Journal of Cotton Research,  2021. 4, 1-12. https://link.springer.com/article/10.1186/s42397-020-00076-y
  45. Xiaoyang Wang#, Yuchen Miao#, Yingfan Cai#, Gaofei Sun, Yinhua Jia, Song Song, Zhaoe Pan,Yuanming Zhang, Liyuan Wang, Guoyong Fu, Qiong Gao, Gaoxiang Ji, Pengpeng Wang, Baojun Chen, Zhen Peng, Xiaomeng Zhang, Xiao Wang, Yi Ding, Daowu Hu, Xiaoli Geng, Liru Wang, Baoyin Pang, Wenfang Gong*, Shoupu He* and Xiongming Du*. Large-fragment insertion activates gene GaFZ (Ga08G0121) and is associated with the fuzz and trichome reduction in cotton (Gossypium arboreum). Plant Biotechnology Journal. 2021,x,1-15; https://onlinelibrary.wiley.com/doi/epdf/10.1111/pbi.13532

  46. Haron Salih, Xiao Wang, Baojun Chen, Yinhua Jia, Wenfang Gong*,Xiongming Du*. Identification, characterization and expression profiling of circular RNAs in the early cotton fiber developmental stages. Genomics. 2021.113,356–365; https://www.sciencedirect.com/science/article/pii/S0888754320320693

  47. Gaoxiang Ji#, Chengzhen Liang#, Yingfan Cai#, Zhaoe Pan, Zhigang Meng, Yanyan Li Yinhua Jia, Yuchen Miao, Xinxin Pei, Wenfang Gong, Xiaoyang Wang, Qiong Gao, Zhen Peng, Liru Wang, Junling Sun, Xiaoli Geng, Pengpeng Wang1, Baojun Chen, Peilin Wang, Tao Zhu, Shoupu He*, Rui Zhang* and Xiongming Du*. A copy number variant at the HPDA-D12 locus confers compact plant architecture in cotton. New Phytologist. 2021, 229, 2091–2103; https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.17059

  48. Liyuan Wang#, Shoupu He#, Souleymane Dia, Gaofei Sun, Xiyan Liu, Xiaoyang Wang, Zhaoe Pan, Yinhua Jia, LiruWang, BaoyinPang, XuezhenSun, XianliangSong*, XiongmingDu*. Alien genomic introgressions enhanced fiber strength in upland cotton (Gossypium hirsutum L.). Industrial Crops and Products.  2021. 159, 113028; https://www.sciencedirect.com/science/article/pii/S0926669020309456

  49. Zhen Peng#, Qiong Gao#, Cheng Luo, Wenfang Gong, Shouwu Tang, Xiaomeng Zhang, Wu Song, Zhenzhen Wang, Hailiang Liu*, Xiongming Du*, Haifeng Liu*. Flavonoid biosynthetic and starch and sucrose metabolic pathways are involved in the pigmentation of naturally brown-colored cotton fibers. Industrial Crops and Products. 2020. 158, 113045; https://www.sciencedirect.com/science/article/abs/pii/S0926669020309626

  50. Xiaoli Geng, Yujie Qu, Zareen Sarfraz, Yinhua Jia, Shoupu He, Zhaoe Pan, Junling Sun, Muhammad Shahid Iqbal, Qinglian Wang, Hongde Qin, Jinhai Liu, Hui Liu, Jun Yang, Zhiying Ma, Dongyong Xu, Jinlong Yang, Jinbiao Zhang, Zhikun Li, Zhongmin Cai, Xuelin Zhang, Xin Zhang, Guanyin Zhou, Lin Li, Haiyong Zhu, Liru Wang, Baoyin Pang  Gaofei Sun*, Xiongming Du*. Genome‐wide dissection of hybridisation for fiber quality‐ and yield‐related traits in upland cotton.  The Plant Journal. 2020, 104, 1285–1300; https://onlinelibrary.wiley.com/doi/10.1111/tpj.14999

  51. Panhong Dai# Gaofei Sun#,Yinhua Jia, Zhaoe Pan,Yingbing Tian,Zhen Peng, Hongge Li, Shoupu He*,  Xiongming Du*.  Extensive haplotypes are associated with population differentiation and environmental adaptability in Upland cotton (Gossypium hirsutum). Theoretical and Applied Genetics. 2020. 133, 3273–3285. https://doi.org/10.1007/s00122-020-03668-z

  52. Abdul Rehman, Rana Muhammad Atif, Abdul Qayyume, Xiongming Du⁎, Lori Hinzef, Muhammad Tehseen Azhar⁎ Genome-wide identification and characterization of HSP70 gene family in four species of cotton. Genomics. 2020, 112, 4442-4453; https://link.springer.com/article/10.1007/s11033-019-04644-7

  53. Shoupu He, Pengpeng Wang, Yuan-Ming Zhang, Panhong Dai, Mian Faisal Nazir, Yinhua Jia, Zhen Peng, Zhaoe Pan, Junling Sun, Liru Wang, Gaofei Sun* and Xiongming Du*. Introgression Leads to Genomic Divergence and Responsible for Important Traits in Upland Cotton. Frontiers in Plant Science, 2020,11:929; https://doi.org/10.3389/fpls.2020.00929

  54. Chenhui Ma, Zibo Zhao, Na Wang, Muhammad Tehseen Azhar and Xiongming Du*.Genome-Wide Identification and Comparative Analysis of Myosin Gene Family in Four Major Cotton Species. Genes, 2020, 11, 731; https://www.mdpi.com/2073-4425/11/7/731

  55. Mian Faisal Nazir, Yinhua Jia, Haris Ahmed, Shoupu He, Muhammad Shahid Iqbal, Zareen Sarfraz, Mushtaque Ali, Chenfan Feng, Irum Raza, Gaofei Sun, Zhaoe Pan and Xiongming Du*. Genomic Insight into Differentiation and Selection Sweeps in the Improvement of Upland Cotton. Plants, 2020, 9, 711; https://www.mdpi.com/2223-7747/9/6/711/htm

  56. Xiaoyang Wang, Yuanming Zhang, Liyuan Wang, Zhaoe Pan, Shoupu He, Qiong Gao, Baojun Chen, Wenfang Gong* and Xiongming Du*.Casparian strip membrane domain proteins in Gossypium arboreum: genome-wide identification and negative regulation of lateral root growth. BMC Genomics, 2020, 21:340; https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-020-6723-9

  57. Haris Ahmed, Mian Faisal Nazi, Zhoe Pan, Wenfang Gong , Muhammad Shahid Iqbal, Shoupu He,  and Xiongming Du*. Genotyping by Sequencing Revealed QTL Hotspots for Trichome-Based Plant Defense in Gossypium hirsutum. Genes, 2020, 11, 368; https://www.mdpi.com/2073-4425/11/4/368/htm

  58. Zhen Peng#, Hua Chen#, Gaofei Sun, Zhaoe Pan, Xiao Wang, Xiaoli Geng, Shoupu He*, Xiongming Du*.Expression patterns and functional divergence of homologous genes accompanied by polyploidization in cotton (Gossypium hirsutum L.). SCIENCE CHINA Life Sciences, 2020, 63, 1565-1579; https://doi.org/10.1007/s11427-019-1618-7

  59. Tahir Mahmood#, Shiguftah Khalid#, Muhammad Abdullah#, Zubair Ahmed, Muhammad Kausar Nawaz Shah, Abdul Ghafoor and Xiongming Du*, Insights into Drought Stress Signaling in Plants and the Molecular Genetic Basis of Cotton Drought Tolerance. Cells. 2020, 9, 105; https://www.mdpi.com/2073-4409/9/1/105#

  60. Haron Salih , Shoupu He, Hongge Li, Zhen Peng  and Xiongming Du*.Investigation of the EIL/EIN3 Transcription Factor Gene Family Members and Their Expression Levels in the Early Stage of Cotton Fiber Development. Plants, 2020, 9, 128; https://www.mdpi.xilesou.top/2223-7747/9/1/128

  61. Liyuan Wang, Xiyan Liu, Xiaoyang Wang, Zhaoe Pan, Xiaoli Geng, Baojun Chen, Baoshen Liu, Xiongming Du* and Xianliang Song*. Identification and characterization analysis of sulfotransferases (SOTs) gene family in cotton (Gossypium) and its involvement in fiber development. BMC Plant Biology 2019, 19: 595; https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-019-2190-3

  62. Muhammad Yasir, Shoupu He, Gaofei Sun, Xiaoli Geng, Zhaoe Pan, Wenfang Gong, Yinhua Jia and Xiongming Du*, A Genome-Wide Association Study Revealed Key SNPs/Genes Associated With Salinity Stres Tolerance In Upland Cotton. Genes 2019, 10, 829; https://www.mdpi.com/2073-4425/10/10/829

  63. Haron Salih, Magwanga Richard Odongo, Wenfang Gong, Shoupu He, Xiongming Du*. Genome-wide analysis of cotton C2H2-zinc finger transcription factor family and their expression analysis during fiber development. BMC Plant Biology. 2019,19:400. https://link.springer.com/article/10.1186/s12870-019-2003-8

  64. Haron Salih, Wenfang Gong, Shoupu He, Wang Xia, Magwanga Richard Odongo and Xiongming Du*. Long non-coding RNAs and their potential functions in Ligon-lintless-1 mutant cotton during fiber development. BMC Genomics. 2019,20:661. https://link.springer.com/article/10.1186/s12864-019-5978-5

  65. Shoupu He#, Gaofei Sun#, Longyu Huang#, Daigang Yang, Panhong Dai, Dayun Zhou, Yuzhen Wu, Xiongfeng Ma, Xiongming Du, Shoujun Wei*, Jun Peng*, Meng Kuang*.Genomic divergence in cotton germplasm related to maturity and heterosis. Journal of Integrative Plant Biology,  2019,61(8),929-942. https://onlinelibrary.wiley.com/doi/pdf/10.1111/jipb.12723
  66. Tussipkan Dilnur#, Zhen Peng#, Zhaoe Pan, Koffi Kibalou Palanga, Yinhua Jia, Wenfang Gong and Xiongming Du*. Association Analysis of Salt Tolerance in Asiatic cotton (Gossypium arboretum) with SNP Markers. International Journal of Molecular Sciences. 2019, 20(9), 2168; https://www.mdpi.com/1422-0067/20/9/2168
  67. Hua Cheng, Gaofei Sun, Shoupu He, Wenfang Gong, Zhen Peng, Ruiping Wang, Zhongxu Lin, and Xiongming Du*. Comparative effect of allopolyploidy on transposable element composition and gene expression between Gossypium hirsutum and its two diploid progenitors, Journal of Integrative Plant Biology, 2019, 61(1): 45-59. https://doi.org/10.1111/jipb.12763
  68. Panhong Dai#, Yuchen Miao#, Shoupu He, Zhaoe Pan, Yinhua Jia, Yingfan Cai, Junling Sun, Liru Wang, Baoyin Pang, Mi Wang* and Xiongming Du*. Identifying favorable alleles for improving key agronomic traits in upland cotton. BMC plant biology, 2019, 19(1): 138. https://doi.org/10.1186/s12870-019-1725-y
  69. Haron Salih, Wenfang Gong, Shoupu He, Nada S. Mustafa, Xiongming Du*. Comparative transcriptome analysis of TUCPs in Gossypium hirsutum Ligon-lintless-1 mutant and their proposed functions in cotton fiber development. Molecular Genetics and Genomics, 2019, 294(1): 23-34. https://doi.org/10.1007/s00438-018-1482-x
  70. Zhiying Ma#*, Shoupu He#, Xingfen Wang#, Junling Sun#, Yan Zhang#, Guiyin Zhang#, Liqiang Wu#, Zhikun Li#, Zhihao Liu#, Gaofei Sun, Yuanyuan Yan, Yinhua Jia, Jun Yang, Zhaoe Pan, Qishen Gu, Xueyuan Li, Zhengwen Sun, Panhong Dai, Zhengwen Liu, Wenfang Gong, Jinhua Wu, Mi Wang, Hengwei Liu, Keyun Feng, Huifeng Ke, Junduo Wang, Hongyu Lan, Guoning Wang, Jun Peng, Nan Wang, Liru Wang, Baoyin Pang, Zhen Peng, Ruiqiang Li, Shilin Tian* & Xiongming Du*. Resequencing a core collection of upland cotton identifies genomic variation and loci influencing fiber quality and yield. Nature Genetics, 2018, 50(6): 803. https://www.nature.com/articles/s41588-018-0119-7
  71. Xiongming Du#, Gai Huang#, Shoupu He#, Zhaoen Yang#, Gaofei Sun#, Xiongfeng Ma#, Nan Li#, Xueyan Zhang, Junling Sun, Min Liu, Yinhua Jia, Zhaoe Pan, Wenfang Gong, Zhaohui Liu, Heqin Zhu, Lei Ma, Fuyan Liu, Daigang Yang, Fan Wang, Wei Fan, Qian Gong, Zhen Peng, Liru Wang, Xiaoyang Wang, Shuangjiao Xu, Haihong Shang, Cairui Lu, Hongkun Zheng, Sanwen Huang, Tao Lin*, Yuxian Zhu* & Fuguang Li*. Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits. Nature Genetics, 2018, 50(6): 796. https://www.nature.com/articles/s41588-018-0116-x
  72. Lei Fang#, Qiong Wang#, Yan Hu#, Yinhua Jia#, Jiedan Chen#, Bingliang Liu#, Zhiyuan Zhang, Xueying Guan, Shuqi Chen, Baoliang Zhou, Gaofu Mei, Junling Sun, Zhaoe Pan, Shoupu He, Songhua Xiao, Weijun Shi, Wenfang Gong, Jianguang Liu, Jun Ma, Caiping Cai, Xiefei Zhu, Wangzhen Guo, Xiongming Du* & Tianzhen Zhang*. Genomic analyses in cotton identify signatures of selection and loci associated with fiber quality and yield traits. Nature Genetics, 2017, 49(7): 1089. https://www.nature.com/articles/ng.3887
  73. Xiongming Du#, Shouye Liu#, Junling Sun, Gengyun Zhang, Yinhua Jia, Zhaoe Pan, Haitao Xiang, Shoupu He, Qiuju Xia, Songhua Xiao, Weijun Shi, Zhiwu Quan, Jianguang Liu, Jun Ma, Baoyin Pang, Liru Wang, Gaofei Sun, Wenfang Gong, Johnie N. Jenkins, Xiangyang Lou, Jun Zhu* and Haiming Xu*. Dissection of complicate genetic architecture and breeding perspective of cottonseed traits by genome-wide association study. BMC genomics, 2018, 19(1): 451. https://doi.org/10.1186/s12864-018-4837-0
  74. Zhen Peng, Shoupu He, Wenfang Gong, Feifei Xu, Zhaoe Pan, Yinhua Jia, Xiaoli Geng and Xiongming Du*. Integration of proteomic and transcriptomic profiles reveals multiple levels of genetic regulation of salt tolerance in cotton. BMC plant biology, 2018, 18(1): 128. https://doi.org/10.1186/s12870-018-1350-1
  75. Zareen Sarfraz#, Muhammad Shahid Iqba#, Zhaoe Pan, Yinhua Jia, Shoupu He, Qinglian Wang, Hongde Qin, Jinhai Liu, Hui Liu, Jun Yang, Zhiying Ma, Dongyong Xu, Jinlong Yang, Jinbiao Zhang, Wenfang Gong, Xiaoli Geng, Zhikun Li, Zhongmin Cai, Xuelin Zhang, Xin Zhang, Aifen Huang, Xianda Yi, Guanyin Zhou, Lin Li, Haiyong Zhu, Yujie Qu, Baoyin Pang, Liru Wang, Muhammad Sajid Iqbal, Muhammad Jamshed1, Junling Sun* and Xiongming Du*. Integration of conventional and advanced molecular tools to track footprints of heterosis in cotton. BMC genomics, 2018, 19(1): 776. https://doi.org/10.1186/s12864-018-5129-4
  76. JIA Yinhua*, PAN Zhaoe , HE Shoupu , GONG Wenfang , GENG Xiaoli , PANG Baoyin , WANG Liru  and DU Xiongming*. Genetic diversity and population structure of Gossypium arboreum L. collected in China. Journal of Cotton Research, 2018, 1(1): 11. https://doi.org/10.1186/s42397-018-0011-0
  77. Wenfang Gong#, Feifei Xu#, Junling Sun, Zhen Peng, Shoupu He, Zhaoe Pan and Xiongming Du*. iTRAQ-based comparative proteomic analysis of seedling leaves of two upland cotton genotypes differing in salt tolerance. Frontiers in plant science, 2017, 8: 2113. https://doi.org/10.3389/fpls.2017.02113
  78. Latyr Diouf, Zhaoe Pan, Shou-Pu He, Wen-Fang Gong, Yin Hua Jia, Richard Odongo Magwanga, Kimbembe Romesh Eric Romy, Harun Or Rashid, Joy Nyangasi Kirungu and Xiongming Du*. High-density linkage map construction and mapping of salt-tolerant QTLs at seedling stage in upland cotton using genotyping by sequencing (GBS). International Journal of Molecular Sciences, 2017, 18(12): 2622. https://www.mdpi.com/1422-0067/18/12/2622/pdf
  79. Zhen Peng#, Shoupu He#, Junling Sun, Zhaoe Pan, Wenfang Gong, Yanli Lu*, and Xiongming Du*. Na+ compartmentalization related to salinity stress tolerance in upland cotton (Gossypium hirsutum) seedlings. Scientific Reports. 2016, 6, 34548. https://www.nature.com/articles/srep34548
  80. Hongjie Feng , Lixue Guo , Gaskin Wang, Junling Sun, Zhaoe Pan, Shoupu He, Heqin Zhu, Jie Sun , Xiongming Du*.The negative correlation between fiber color and quality traits revealed by QTL analysis. PLos One, 2015, 10(6): e0129490.  https://doi.org/10.1371/journal.pone.0129490
  81. Wenyan An#, Wenfang Gong#, Shoupu He, Zhaoe Pan, Junling SunEmail author and Xiongming Du*. MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum. BMC Genomics, 2015, 16(1): 886. https://doi.org/10.1186/s12864-015-2071-6
  82. Zhen Peng, Shoupu He, Wenfang Gong, Junling Sun, Zhaoe Pan, Feifei Xu, Yanli Lu*, Xiongming Du*. Comprehensive analysis of differentially expressed genes and transcriptional regulation induced by salt stress in two contrasting cotton genotypes. BMC Genomics, 2014, 15(1):760. https://doi.org/10.1186/1471-2164-15-760
  83. Wenfang Gong#, Shoupu He#, Jiahuan Tian, Junling Sun, Zhaoe Pan, Yinhua Jia, Gaofei Sun, Xiongming Du*. Comparison of the transcriptome between two cotton lines of different fiber color and quality. PLos one, 2014, 9(11): e112966. https://doi.org/10.1371/journal.pone.01129669
  84. Yinhua Jia# , Xiwei Sun# , Junling Sun# , Zhaoe Pan, Xiwen Wang, Shoupu He, Songhua Xiao, Weijun Shi, Zhongli Zhou, Baoyin Pang, Liru Wang, Jianguang Liu, Jun Ma, Xiongming Du*, Jun Zhu*. Association mapping for epistasis and environmental interaction of yield traits in 323 cotton cultivars under 9 different environments. PloS one, 2014, 9(5): e95882. https://doi.org/10.1371/journal.pone.0095882
  85. Gaskin Wang，GuoHong Zhao，YinHua Jia，Xiongming Du*. Identification and Characterization of Cotton Genes Involved in Fuzz‐Fibe Development. Journal of Integrative Plant Biology, 2013,55,(7):619-630. https://doi.org/10.1111/jipb.12072
  86. Gaskin Wang  Hongjie Feng  Junling Sun  Xiongming Du*. Induction of cotton ovule culture fibre branching by co-expression of cotton BTL, cotton SIM, and Arabidopsis STI genes. Journal of Experimental Botany, 2013, 64(14): 4157-4168.  https://doi.org/10.1093/jxb/ert222
  87. Ibrahim Khaskheli, J. Ling Sun, S. Pu He, X. Ming Du*. Screening of cotton germplasm for resistance to Verticillium dahlia Kleb. under greenhouse and field conditions. European journal of plant pathology, 2013, 137(2): 259-272. https://link.springer.com/content/pdf/10.1007%2Fs10658-013-0235-2.pdf
  88. Feng HJ, Sun JL, Wang J, Jia YH, Zhang XY, Pang BY, Sun J, Du XM*. Genetic effects and heterosis of the fibre colour and quality of brown cotton (Gossypium hirsutum). Plant breeding, 2011, 130(4): 450-456. https://doi.org/10.1111/j.1439-0523.2010.01842.x
  89. Shou-Pu He, Jun-Ling Sun, Chao Zhang, Xiong-Ming Du*. Identification of exotic genetic components and DNA methylation pattern analysis of three cotton introgression lines from Gossypium bickii. Molecular Biology, 2011, 45(2): 204-210. https://link.springer.com/content/pdf/10.1134%2FS002689331102018X.pdf
  90. Zhang C, Sun JL, Jia YH, Wang J, Xu ZJ, Du XM*. Morphological characters, inheritance and response to exogenous hormones of a cotton super‐dwarf mutant of Gossypium hirsutum. Plant breeding, 2011, 130(1): 67-72. https://onlinelibrary.wiley.com/doi/full/10.1111/j.1439-0523.2009.01759.x
  91. Sheng WANG, Guo-hong ZHAO, Yin-hua JIA, Xiong-ming DU*. Molecular Cloning, and Characterization of an Adenylyl Cyclase-Associated Protein from Gossypium arboreum L. Agricultural Sciences in China, 2009, 8(7): 777-783. https://doi.org/10.1016/S1671-2927(08)60278-3

二、卓越行动计划期刊（2016年起-）

  1. 王晓阳，彭振，邢爱双，赵盈睿，马欣丽，刘方*，杜雄明* ，何守朴*. 亚洲棉短纤维发育相关长链非编码 RNA 的鉴定及表达.中国农业科学 2023, 56(23): 4565-4584.

  2. 王娜，赵资博，高琼，何守朴，马晨辉，彭振*，杜雄明*, 陆地棉盐胁迫应答基因GhPEAMT1 的克隆及功能分析.陆地棉盐胁迫应答基因GhPEAMT1 的克隆及功能分析. 中国农业科学. 2021,54(2): 248-260

  3. 王晓阳，王丽媛，潘兆娥，何守朴，王骁，龚文芳*，杜雄明*. 亚洲棉短绒突变体纤维发育及其差异基因表达分析. 作物学报, 2020, 046(005):645-660.

  4. 王晓阳, 孙亚莉, 程华, 潘兆娥, 何守朴, 和杜雄明, 龚文芳*, 杜雄明*. 亚洲棉光籽种质资源的遗传学分析. 植物遗传资源学报, 2020, 21(4):884-895

  5.  曲玉杰, 孙君灵, 耿晓丽, 王骁, Zareen Sarfraz, 贾银华, 潘兆娥, 何守朴, 龚文芳, 王立如, 庞保印, 杜雄明*. 陆地棉亲本间遗传距离与杂种优势的相关性研究. 中国农业科学, 2019,52(09):1488-1500.

  6. 季高翔，何守朴，潘兆娥，龚文芳，贾银华，王立如，王朋朋，耿晓丽，杜雄明*. 基于重测序开发的InDel标记定位陆地棉矮化突变体. 棉花学报, 2018, 30(06):448-454.

  7. 杜雄明*，刘方，王坤波，贾银华，周忠丽，何守朴，龚文芳，潘兆娥，王立如，耿晓丽，庞保印. 棉花种质资源收集鉴定与创新利用. 棉花学报, 2017(z1).

  8. 彭振，何守朴，龚文芳，潘兆娥，贾银华，卢艳丽*，杜雄明*. 陆地棉幼苗NaCl胁迫下转录因子的转录组学分析. 作物学报, 2017, 043(003):354-370.

  9. 代攀虹，孙君灵，何守朴，王立如，贾银华，潘兆娥，庞保印，杜雄明*，王谧*. 陆地棉核心种质表型性状遗传多样性分析及综合评价. 中国农业科学, 2016, 49(019):3694-3708.

  10. 代攀虹，孙君灵，贾银华，杜雄明*，王谧*. 利用表型数据构建陆地棉核心种质. 植物遗传资源学报, 2016, 6(17):961-968.

三、授权发明专利

  1.  何守朴、彭振、杜雄明、孙君灵、贾银华、潘兆娥、王立如、庞保印。 一种棉花种质耐盐性的高效鉴定方法，2015.8.5, 中国。 ZL20131 0330851.8

  2.  杜雄明、冯鸿杰、孙杰、孙君灵、何守朴、潘兆娥、贾银华、周忠丽。与棕色棉纤维色泽主效QTL 连锁的分子标记及其应用，2012.12，中国，ZL201110031121.9

  3.  杜雄明、潘兆娥、孙君灵、周忠丽、贾银华、董 薇、刘国强、庞保印。一种SSR 分子指纹鉴定方法，2011.12，中国，ZL 200710177141.0

四、专著

  1. Abdul Rehman, Hafiza Iqra Almas, Abdul Qayyum, Hongge Li, Zhen Peng, Guangyong Qin, Yinhua Jia, Zhaoe Pan, Shoupu He, Xiongming Du. Plant Growth Regulators for Climate-Smart Agriculture//Abscisic Acid and Abiotic Stress Tolerance in Crops. 2021,12 9781003109013 

  2. Abdul Rehman, Hafiza Iqra Almas, Abdul Qayyum, Hongge Li, Zhen Peng, Guangyong Qin, Yinhua Jia, Zhaoe Pan, Fazal Akbar, Shoupu He, Xiongming Du.Plant Growth Regulators for Climate-Smart Agriculture//Role of Phytohormones in Drought Stress. 2021, 18, 9781003109013

  3. Wenfang Gong, Xiongming Du, Yinhua Jia, and Zhaoe Pan. Color Cotton and Its Utilization in China //Cotton Fiber: Physics, Chemistry and Biology. Springer, Cham, 2018: 95-115. https://link.springer.com/chapter/10.1007/978-3-030-00871-0_6

  4. 《棉花种质资源描述规范和数据标准》，2005，中国农业出版社,编委

  5. 《中国棉花品种志》2009年,中国农业科学技术出版社，副主编