代表性工作

1. Xiao Chen, Yinglu Li, Fang Zhu, Xinjing Xu, Brian Estrella, Manuel A. Pazos II, John T. McGuire, Dimitris Karagiannis, Varun Sahu, Mustafo Mustafokulov, Claudio Scuoppo, Francisco J. Sánchez-Rivera, Yadira M. Soto-Feliciano, Laura Pasqualucci, Alberto Ciccia, Jennifer E. Amengual & Chao Lu (2023). Context-defined cancer co-dependency mapping identifies a functional interplay between PRC2 and MLL-MEN1 complex in lymphoma. Nature Communications. 14(1), 4259. DOI: 10.1038/s41467-023-39990-5. （一区Top，IF=16.6）
2. Yinglu Li, Elizabeth M. Goldberg, Xiao Chen (co-first author), Xinjing Xu, John T. McGuire, Giuseppe Leuzzi, Dimitris Karagiannis, Tiffany Tate, Nargess Farhangdoost, Cynthia Horth, Esther Dai, Zhiming Li, Zhiguo Zhang, Benjamin Izar, Jianwen Que, Alberto Ciccia, Jacek Majewski, Angela J. Yoon, Laurie Ailles, Cathy Lee Mendelsohn & Chao Lu (2022). Histone methylation antagonism drives tumor immune evasion in squamous cell carcinomas. Molecular Cell, 82(20), 3901-3918. DOI: 10.1016/j.molcel.2022.09.007. （一区Top，IF=16.0）
3. Kartik N. Rajagopalan, Xiao Chen (co-first author), Daniel N. Weinberg, Haifen Chen, Jacek Majewski, C. David Allis & Chao Lu (2021). Depletion of H3K36me2 recapitulates epigenomic and phenotypic changes induced by the H3.3K36M oncohistone mutation. PNAS, 118(9), e2021795118. DOI: 10.1073/pnas.2021795118. （一区Top，IF=11.1）
4. Fei Ye, Xiao Chen (co-first author), Yuan Li, Aili Ju, Yalan Sheng, Lili Duan, Jiachen Zhang, Zhe Zhang, Khaled A. S. Al-Rasheid, Naomi A. Stover, Shan Gao (2024). Comprehensive genome annotation of the model ciliate Tetrahymena thermophila by in-depth epigenetic and transcriptomic profiling. Nucleic Acids Research, In press. （二区Top，IF=14.9）
5. Xiao Chen, Yaohan Jiang, Feng Gao, Weibo Zheng, Timothy J. Krock, Naomi A. Stover, Chao Lu, Laura A. Katz & Weibo Song (2019). Genome analyses of the new model protist Euplotes vannus focusing on genome rearrangement and      resistance to environmental stressors. Molecular Ecology Resources, 19(5), 1292-1308. DOI: 10.1111/1755-0998.13023. （一区Top，IF=7.7）
6. Xiao Chen, Yurui Wang, Yalan Sheng, Alan Warren & Shan Gao (2018). GPSit: an automated method for evolutionary analysis of nonculturable ciliated microeukaryotes. Molecular Ecology Resources, 18(3), 700-713. DOI: 10.1111/1755-0998.12750. （一区Top，IF=7.7）
7. Yuanyuan Wang, Xiao Chen (co-first author), Yalan Sheng, Yifan Liu & Shan Gao (2017). N⁶-adenine DNA methylation is associated with H2A.Z-containing well-positioned nucleosomes in Pol II-transcribed genes in Tetrahymena. Nucleic Acids Research, 45(20), 11594-11606. DOI: 10.1093/nar/gkx883. （二区Top，IF=14.9）
8. Xiao Chen, Shan Gao, Yifan Liu, Yuanyuan Wang, Yurui Wang & Weibo Song (2016). Enzymatic and chemical mapping of nucleosome distribution in purified micro- and macronuclei of the ciliated model organism, Tetrahymena thermophila. Science China Life Sciences, 59(9), 909-919. DOI: 10.1007/s11427-016-5102-x. （一区Top，IF=9.1）
9. Xiao Chen, Xiaolu Zhao, Xiaohui Liu, Alan Warren, Fangqing Zhao & Miao Miao (2015). Phylogenomics of non-model ciliates based on transcriptomic analyses. Protein & Cell,  6(5), 373-385. DOI: 10.1007/s13238-015-0147-3. （一区Top，IF=21.1）
10. Wen Song, Huixin Jiao, Juan Yang, Danxu Tang, Tingting Ye, Lu Li, Lei Yang, Lifang Li, Weibo Song, Saleh A. Al-Farraj, Hunter N. Hines, Weiwei Liu & Xiao Chen (corresponding author) (2023). New evidence of consistency between      phylogeny and morphology for two taxa in ciliated protists, the subclasses Oligotrichia and Choreotrichia (Protista, Ciliophora). Molecular Phylogenetics and Evolution. 188, 107911. DOI: 10.1016/j.ympev.2023.107911. （一区Top，IF=4.1）
11. Yimeng Fang, Vaibhav S. Mangipudy, Chao Lu, Songtao Jia & Xiao Chen (corresponding author) (2023). Recognition of Histone Methylation and DNA by PWWP Domain: Mechanism and Function. In Chromatin Readers in Health and Disease. Trygve O Tollefsbol, Olivier Binda (eds). Academic Press, New York. ISBN: 9780128233764. DOI: 10.1016/B978-0-12-823376-4.00008-2. (Book chapter)