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Food Chemistry, Volume 374, 16 April 2022 Investigating mechanism of sweetness intensity differences through dynamic analysis of sweetener–T1R2–membrane systems Yulu Miao, Hui Ni, Xingyi Zhang, Fengdong Zhi, Xiang Long, Xuepeng Yang, Xiao He*, Lujia Zhang*
LWT - Food Science and Technology, Volume 167, 15 September 2022 High-level expression and improved pepsin activity by enhancing the conserved domain stability based on a scissor-like model Yue Zhao, Yulu Miao, Yalong Cong, Jiawei Wang, Fengdong Zhi, Yue Pan Jianguo Zhang, John Z.H. Zhang*, Lujia Zhang*
Frontiers in Molecular Biosciences, 23 May 2022 Rational Design of P450 aMOx for improving anti-Markovnikov selectivity based on Butterfly Model Yue Pan, Jinxiao Bao, Xingyi Zhang, Hui Ni, Yue Zhao, Fengdong Zhi, Bohuan Fang, Xiao He*, John Z.H. Zhang*, Lujia Zhang*
Biomateries, Volume 287, August 2022 Umami polypeptide detection system targeting the human T1R1 receptor and its taste-presenting mechanism Chuanxi Zhang, Yulu Miao, Yinghui Feng, Jiawei Wang, Zhuoli Tian, Juan Dong, Bei Gao*, Lujia Zhang*
Food & Function, 21 May 2021 Drug-guided screening for pancreatic lipase inhibitors in functional foods Lujia Zhang, Jinkai Zheng, Mingzhe Ma, Yue Zhao, Jia Song, Xin Chen, Wanxiu Cao, Xiao He, Changhu Xue, Qingjuan Tang*
Frontiers in Physics, 30 September 2021 Rational Design of Pepsin for Enhanced Thermostability via Exploiting the Guide of Structural Weakness Stability Yue Zhao, Yulu Miao, Fengdong Zhi, Yue Pan, Jianguo Zhang, Xuepeng Yang, John Z. H. Zhang*, Lujia Zhang*
RSC Advances, 06 April 2021 Engineering the biomimetic cofactors of NMNH for cytochrome P450 BM3 based on binding conformation refinement Yao Liu, Yalong Cong, Chuanxi Zhang, Bohuan Fang, Yue Pan, Qiangzi Li, Chun You, Bei Gao, John Z. H. Zhang, Tong Zhu*, Lujia Zhang*
Chemical Biology & Drug Design, February 2021 Identification of three new compounds that directly target human serine hydroxymethyltransferase 2 Yanfang Han, Liping He, Yifei Qi, Yue Zhao, Yue Pan, Bohuan Fang, Sha Li, John Z. H. Zhang*, Lujia Zhang*
Food Science & Nutrition, 03 May 2021 Investigation on the characteristics and mechanisms of ACE inhibitory peptides by a thorough analysis of all 8000 tripeptides via binding free energy calculation Ruiyao Chen, Yulu Miao, Xuan Hao, Bei Gao, Mingzhe Ma, John Z. H. Zhang, Rui Wang, Sha Li, Xiao He*, Lujia Zhang*
Journal of Chemical Information and Modeling, 26 July 2021 Anchor-Locker Binding Mechanism of the Coronavirus Spike Protein to Human ACE2: Insights from Computational Analysis Yalong Cong, Yinghui Feng, Hui Ni, Fengdong Zhi, Yulu Miao, Bohuan Fang, Lujia Zhang*, John Z. H. Zhang*
Journal of Molecular Biology, Volume 433, 25 June 2021 Programmed Flagellar Ejection in Caulobacter crescentus Leaves PL-subcomplexes Mohammed Kaplan, Yuhang Wang, Georges Chreifi, Lujia Zhang, Yi-Wei Chang, Grant J. Jensen*
Journal of Agricultural and Food Chemistry, 16 April 2020 An Energy Optimization Strategy Based on the Perfect Conformation of Prolyl Endopeptidase for Improving Catalytic6 Efficiency Xiaolin Li, Yalong Cong, Mingzhe Ma, Zhineng You, Bei Gao, John Zeng Hui Zhang*, Lujia Zhang*
Proceedings of the National Academy of Sciences of the United States of America, 17 January 2020 M06-SX screened-exchange density functional for chemistry and solid-state physics Ying Wang, Verma, Pragya, Lujia Zhang, Yaqi Li, Zhonghua Liu, Truhlar Donald G.*, Xiao He*
Journal of Food Biochemistry, 04 October 2018 Identification and magnetic immobilization of a pyrophilous aspartic protease from Antarctic psychrophilic fungus Bei Gao, Lei He, Dongzhi Wei, Lujia Zhang*
Protein Science, 03 May 2018 Crius: A novel fragment-based algorithm of de novo substrate prediction for enzymes Zhiqiang Yao, Shuiqin Jiang, Lujia Zhang*, Bei Gao, Xiao He, John Z. H. Zhang, Dongzhi Wei*
Biochemical Engineering Journal, Volume 129, 15 January 2018 Energy and conformation determine the enantioselectivity of enzyme Bei Gao, Shuiqin Jiang, Liuzhu Wang, Lujia Zhang* , Dongzhi Wei*
Catalysis Science & Technology, 15 February 2017 Switching a nitrilase from Syechocystis sp. PCC6803 to a nitrile hydratase by rationally regulating reaction pathways Shuiqin Jiang, Lujia Zhang*, Zhiqiang Yao, Bei Gao, Hualei Wang, Xiangzhao Mao, Dongzhi Wei*
Food Chemistry, Volume 221, 15 April 2017 The structure features of umami hexapeptides for the T1R1/T1R3 receptor Xiaqin Yu, Lujia Zhang*, Xiaodan Miao, Yanyu Li, Yuan Liu*
Journal of Chemical Information and Modeling, 23 August 2019 Study of SHMT2 Inhibitors and Their Binding Mechanism by Computational Alanine Scanning Liping He, Jingxiao Bao, Yunpeng Yang, Suzhen Dong, Lujia Zhang, Yifei Qi*, John Z. H. Zhang*
Journal of Food Measurement and Characterization, 11 April 2019 Cloning, purification and biochemical characterization of recombinant Cathepsin L from Takifugu rubripes and its role in taste formation Qilong Tang, Wenli Wang, Lujia Zhang, Yuan Liu*
Journal of Solid State Chemistry, Volume 272, April 2019 Syntheses, structures, optical properties, and electronic structures of Ba6Cu2GSn4S16 (G = Fe, Ni) and Sr6D2FeSn4S16 (D = Cu, Ag) Lingyun Zhang, Dajiang Mei*, Yuanwang Wu, Chenfei Shen, Wenxin Hu, Lujia Zhang, Jinjin Li, Yuandong Wu, Xiao He
Applied Microbiology and Biotechnology, 06 December 2018 Structure-based design of agarase AgWH50C from Agarivorans gilvus WH0801 to enhance thermostability Pujuan Zhang, Jinru Zhang, Lujia Zhang, Jianan Sun, Yuan Li, Lian Wu, Jiahai Zhou, Changhu Xue, Xiangzhao Mao*
Food Chemistry, Volume 245, 15 April 2018 Development and characterization of an α-L-rhamnosidase mutant with improved thermostability and a higher efficiency for debittering orange juice Lijun Li, Zheyu Wu, Yue Yu, Lujia Zhang, Yanbing Zhu, Hui Ni*, Feng Chen
Journal of Agricultural and Food Chemistry, 18 January 2018 Antihypertensive effects, molecular docking study, and isothermal titration calorimetry assay of angiotensin I?converting enzyme inhibitory peptides from Chlorella vulgaris Jingli Xie*, Xujun Chen, Junjie Wu, Yanyan Zhang, Yan Zhou, Lujia Zhang, YaJie Tang, Dongzhi Wei*
BMC Biotechnology, 28 February 2017 Functional expression of a novel α-amylase from Antarctic psychrotolerant fungus for baking industry and its magnetic immobilization Lei He, Youzhi Mao, Lujia Zhang, Hualei Wang, Siti Aisyah Alias, Bei Gao*, Dongzhi Wei
Scientific Reports, 17 October 2017 Novel application of magnetic protein: convenient one-step purification and immobilization of proteins Min Jiang, Lujia Zhang, Fengqing Wang, Jie Zhang, Guosong Liu, Bei Gao*, Dongzhi Wei*
Journal of Agricultural and Food Chemistry, 27 August 2019 Biochemical Characterization and substrate degradation mode of a novel exotype β-agarase from Agarivorans gilvus WH0801 Yunxiao Liang, Xiaoqing Ma, Lujia Zhang, Fuli Li, Zhen Liu, Xiangzhao Mao*
Process Biochemistry, Volume 63, December 2017 Angiotensin I-converting enzyme inhibitory peptides from Sipuncula (Phascolosoma esculenta): purification, identification, molecular docking and antihypertensive effects on spontaneously hypertensive rats Mingrong Guo, Xujun Chen, Yanling Wu, Lujia Zhang, Weixue Huang, Ying Yuan, Ming Fang, Jingli Xie*, Dongzhi Wei*
Chemical Physics Letters, Volume 685, 01 October 2017 Computational search for aflatoxin binding proteins Ying Wang, Jinfeng Liu, Lujia Zhang, Xiao He*, John Z.H. Zhang*
Journal of Biotechnology, Volume 249, 10 May 2017 Identification of a novel phospholipase D with high transphosphatidylation activity and its application in synthesis of phosphatidylserine and DHA-phosphatidylserine Xiangzhao Mao*, Qianqian Liu, Yongqian Qiu, Xiaoqin Fan, Qingqing Han, Yanjun Liu, Lujia Zhang, Changhu Xue*
Biotechnology for Biofuels, 13 June 2016 Improvement of the thermostability and catalytic efficiency of a highly active β-glucanase from Talaromyces leycettanus JCM12802 by optimizing residual charge–charge interactions Shuai You, Tao Tu, Lujia Zhang, Yuan Wang, Huoqing Huang, Rui Ma, Pengjun Shi, Yingguo Bai, Xiaoyun Su, Zhemin Lin, Huiying Luo*, Bin Yao*
Scientific Reports, 06 October 2016 The important role of halogen bond in substrate selectivity of enzymatic catalysis Shuiqin Jiang, LujiaZhang*, DongbinCui, ZhiqiangYao, BeiGao, Jinping Lin, DongzhiWei*
Journal of Agricultural and Food Chemistry, 16 September 2016 Characterization of a Novel α- L -arabinofuranosidase from ruminococcus albus 7 and rational design for its thermostability Ying Yang, Jiaqi Sun, Junjie Wu, Lujia Zhang, Lei Du,Shingo Matsukawa, Jingli Xie*, Dongzhi Wei
Journal of Chemical Information and Modeling, 16 August 2016 A semi-automated structure-based method to predict substrate of enzyme via molecular docking: a case study with Candida antarctica Lipase B Zhiqiang Yao, Lujia Zhang*, Bei Gao, Dongbing Cui, Fengqing Wang, Xiao He,John Z. H. Zhang, Dongzhi Wei*
Chemical Physics Letters, Volume 659, 16 August 2016 Predicted PAR1 inhibitors from multiple computational methods Ying Wang, Jinfeng Liu, Tong Zhu, Lujia Zhang, Xiao He*, John Z.H. Zhang*
Journal of Chemical Information and Modeling, Volume 56, 18 April 2016 PBSA_E: a PBSA-based free energy estimator for protein-ligand binding affinity Xiao Liu, Jinfeng Liu, Tong Zhu, Lujia Zhang, Xiao He*, John Z. H. Zhang*
Applied and Environmental Microbiology, 13 November 2015 Protein engineering of a nitrilase from Burkholderia cenocepacia J2315 for efficient and enantioselective production of (R)-o-chloromandelic acid Hualei Wang, Wenyuan Gao, Huihui Sun, Lifeng Chen, Lujia Zhang, Xuedong Wang*, Dongzhi Wei*
Applied and Environmental Microbiology, 4 September 2015 Improvement in thermostability of an Achaetomium sp. strain Xz8 endopolygalacturonase via the optimization of charge-charge interactions Tao Tu, Huiying Luo, Kun Meng, Yanli Cheng, Rui Ma, Pengjun Shi, Huoqing Huang, Yingguo Bai, Yaru Wang, Lujia Zhang*, Bin Yao*
Plos One, 01 September 2015 New insights into the role of T3 loop in determining catalytic efficiency of GH28 endo-polygalacturonases Tao Tu, Kun Meng, Huiying Luo, Ossi Turunen, Lujia Zhang, Yanli Cheng, Xiaoyun Su, Rui Ma, Pengjun Shi, Yaru Wang, Peilong Yang, Bin Yao*
Starch-Starke, 26 August 2015 A novel saccharifying a- amylase of Antarctic psychrotolerant fungi Geomyces pannorum: gene cloning, functional expression, and characterization Bei Gao, Youzhi Mao, Lujia Zhang*, Lei He, Dongzhi Wei
Process Biochemistry, Volume 50, October 2015 Development of a novel Aspergillus uracil deficient expression system and its application in expressing a cold-adapted α-amylase gene from Antarctic fungi Geomyces pannorum Youzhi Mao, Yanchen Yin, Lujia Zhang, Siti Aisyah Alias, BeiGao*, DongzhiWei
Journal of Agricultural and Food Chemistry, 23 March 2015 Novel α-L-Arabinofuranosidase from Cellulomonas fimi ATCC 484 and its substrate -specificity analysis with the aid of computer Ying Yang, Lujia Zhang, Mingrong Guo, Jiaqi Sun, Shingo Matsukawa, Jingli Xie*, Dongzhi Wei
Febs Journal, 28 March 2015 A computational strategy for altering an enzyme in its cofactor preference to NAD(H) and/or NADP(H) Dongbing Cui, Lujia Zhang*, Shuiqin Jiang, Zhiqiang Yao, Bei Gao, Jinping Lin, Y. Adam Yuan, Dongzhi Wei*
BMC Biotechnol, 24 December 2014 Cloning of a novel thermostable glucoamylase from thermophilic fungus Rhizomucor pusillus and high-level co-expression with α-amylase in Pichia pastoris Zhenggui He, Lujia Zhang, Youzhi Mao, Jingchao Gu, Qi Pan, Sixing Zhou, Bei Gao*, Dongzhi Wei*
Proteins, 13 May 2014 Structural insights into substrate and coenzyme preference by SDR family protein Gox2253 from Gluconobater oxydans Bo Yin, Dongbing Cui, Lujia Zhang, Shuiqin Jiang, Satoru Machida, Y. Adam Yuan*, Dongzhi Wei*
Protein science, 11 August 2014 Structural and mutational studies on an aldo-keto reductase AKR5C3 from Gluconobacter oxydans Xu Liu, Chao Wang, Lujia Zhang, Zhiqiang Yao, Dongbing Cui, Liang Wu, Jinping Lin*, YuRen Adam Yuan*, Dongzhi Wei
Journal of Structural Biology, Volume 188, November 2014 Structural insights into enzymatic activity and substrate specificity determination by a single amino acid in nitrilase from Syechocystis sp. PCC6803 Lujia Zhang#, Bo Yin#, Chao Wang, Shuiqin Jiang, Hualei Wang, Y. Adam Yuan*, Dongzhi Wei*
Bioresources and Bioprocessing, 09 October 2014 Virtual screening for angiotensin I-converting enzyme inhibitory peptides from Phascolosoma esculenta Yalan Liu, Lujia Zhang, Mingrong Guo, Hongxi Wu, Jingli Xie*, Dongzhi Wei
Process Biochem, Volume 49, May 2014 In vitro and in vivo ACE inhibitory of pistachio hydrolysates and in silico mechanism of identified peptide binding with ACE Peng Li, Jia Jia, Ming Fang, Lujia Zhang, Mingrong Guo, Jingli Xie*, Yuelan Xia, Li Zhou, Dongzhi Wei
BBA-proteins and Proteomics, Volume 1844, July 2014 Structure, mechanism, and enantioselectivity shifting of lipase LipK107 with a simple way Lujia Zhang, Bei Gao, Zuanning Yuan, Xiao He, Y. Adam Yuan, John Z.H. Zhang*, Dongzhi Wei*
Protein science, 29 October 2013 A method to rationally increase protein stability based on the charge-charge interaction, with application to lipase LipK107 Lujia Zhang, Xiaomang Tang, Dongbing Cui, Zhiqiang Yao, Bei Gao, Shuiqin Jiang, Bo Yin, Y. Adam Yuan*, Dongzhi Wei*
Journal of Biotechnology, Volume 167, 20 September 2013 Computational design of short-chain dehydrogenase Gox2181 for altered coenzyme specificity Dongbing Cui, Lujiang Zhang*, Zhiqiang Yao, Xu Liu, Jinping Lin, Y. Adam Yuan, Dongzhi Wei*
Journal of Agricultural and Food Chemistry, 22 February 2013 Purification of xylitol dehydrogenase and improved production of xylitol by increasing XDH activity and NADH supply in Gluconobacter oxydans Jinliang Zhang, Sha Li, Hong Xu*, Peng Zhou, Lujia Zhang, Pingkai Ouyang
Biochimie, Volume 94, June 2012 Structure- based characterization of canine-human chimeric uricases and its evolutionary implications Chun Zhang, Kai Fan, Weitao Zhang, Ruixin Zhu, Lujia Zhang, Dongzhi Wei*
Journal of Molecular Catalysis B: enzymatic, Volume 71, September 2011 Construction of a whole-cell catalyst displaying a fungal lipase for effective treatment of oily wastewaters Huiting Song, Lichao Zhou, Lujia Zhang, Bei Gao, Dongzhi Wei, Yaling Shen, Rui Wang, Catherine Madzak, Zhengbing Jiang*
Journal of Molecular Catalysis B: enzymatic, Volume 68, March 2011 Improving the catalytic activity of lipase LipK107 from Proteus sp. by site-directed mutagenesis in the lid domain based on computer simulation Bei Gao, Tao Xu, Jinping Lin, Lujia Zhang, Erzheng Su, Zhengbing Jiang, Dongzhi Wei*
Biochimica ET Biophysica ACTA-Proteins and Proteomics, Volume 1804, December 2010 Template- based modeling of a psychrophilic lipase: conformational changes, novel structural features and its application in predicting the enantioselectivity of lipase catalyzed transesterification of secondary alcohols Tao Xu, Bei Gao, Lujia Zhang, Jingpin Lin, Xuedong Wang, Dongzhi Wei*
Molecular Simulation, 24 November 2010 A novel protocol of energy optimisation for predicted protein structures built by homology modelling Tao Xu, Lujia Zhang, Xuedong Wang, Dongzhi Wei*
Journal of Molecular Catalysis B: enzymatic, Volume 62, March 2010 Disparity in productive binding mode of the slow-reacting enantiomer determines the novel catalytic behavior of Candida antarctica lipase B Tao Xu, Lujia Zhang, Erzheng Su, Dongbing Cui, Xuedong Wang*, Dongzhi Wei*
BMC Bioinformatics, 21 August 2009 Structure-based substrate screening for an enzym Tao Xu, Lujia Zhang, Xuedong Wang*, Dongzhi Wei*
Qun Wu, Hong Xu*, Lujia Zhang, Jun Yao, Pingkai Ouyang, Volume 43, December 2006 Production, purification and properties of γ-glutamyltranspeptidase from a newly isolated Bacillus subtilis NX-2
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