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个人简介

刘芳华,“电微生物”团队负责人。2016年山东省杰青,是德国马普学会奖学金获得者,烟台市“双百计划”第二层次高端创新人才,现任山东微生物学会理事,2015和2016年连续两年入选国家优青候选人,多年从事新型微生物资源开发与温室气体循环利用方面的研究工作,在德国马普陆地微生物研究所(Ralf Conrad)深造,在微生物介导的碳循环方面取得了创新性的成果。H影响因子为14,发表SCI论文22篇,其中第一作者论文6篇, 通讯作者论文4篇,最高单篇影响因子达到25.427 (Energy & Environmental Science),SCI总引563次,其中第一作者论文SCI他引169次,单篇最高SCI引用64次。

研究领域

D010504.土壤生物学 (1)土壤生物与元素循环 Soil Organisms and Element Cycle 土壤碳循环 soil carbon cycle 产甲烷古菌 methanogenic archaea 铁循环细菌 bacteria related to iron cycle 耦合机制 coupling mechanism 全球变化 global change (2) 土壤生物与矿物相互作用 Soil Bio-mineral Interaction 微生物细胞 microbial cell 电子转移 electron transfer 电子传递 electron transport 电子穿梭体 electron shuttle 生物矿化 biological mineralization 主要研究方向: 滨海湿地土壤(陆地,潮上带)、河流(河口及滩涂,潮间带)和浅海(海洋,潮下带)沉积物中的微生物胞外电子传递机制。 代表研究进展: (1) 发现土壤和沉积物中广泛存在的纳米磁铁矿具有促进微生物种间直接电子传递的功能。从分子层面揭示了纳米磁铁矿能够补偿一种关键的c型细胞色素的电子传递能力。迄今为止,这是无机矿物以类似于生物内源细胞色素的功能促进微生物电子传递的第一份证据。 该工作为从微观分子视角揭示宏观的地球化学循环等重要过程提供了新的认识,为进一步了解并利用土壤矿物的环境效应,加快有机污染物的转化和降解提供了理论依据(图1)。该工作已经于2015年发表在Environmental Microbiology (IF=5.932)杂志上(Liu et al., 2015)。该成果与先前的研究成果一并被Frontiers in Microbiology杂志中的综述文章列为目前已知的微生物种间电子传递过程五大机制中的两种 (2) 发现新的产甲烷古菌Methanosarcina mazei也能够与属于Geobacteraceae的细菌一起形成进行种间直接电子传递所必须的团聚体结构,暗示其存在种间直接电子传递的可能。该成果于2015年已经发表在Frontiers in Microbiology杂志上 (IF=4.165)。

土壤微生物元素地球化学循环,在碳、铁循环中的微生物胞外电子传递机制方面取得了创新性的成果。提出并证实了细菌与产甲烷古菌之间通过种间直接电子传递产甲烷的新机制,发现导电的活性炭颗粒以及磁铁矿能够促进这一过程,对揭示土壤微生物驱动的碳和铁耦合循环新机制及其对全球气候变化的贡献具有重要科学意义。

近期论文

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[1] Zheng, Shiling,Liu, Fanghua,Wang, Bingchen,Zhang, Yuechao,&Lovley, Derek R..(2020).Methanobacterium Capable of Direct Interspecies Electron Transfer.ENVIRONMENTAL SCIENCE & TECHNOLOGY,54(23),15347-15354. [2] Xiao, Leilei,Liu, Fanghua,Lichtfouse, Eric,Zhang, Peng,Feng, Dawei,&Li, Fangbai.(2020).Methane production by acetate dismutation stimulated by Shewanella oneidensis and carbon materials: An alternative to classical CO2 reduction.CHEMICAL ENGINEERING JOURNAL,389,124469. [3] Hao, QQ,Liu, FH,Zhang, YC,Wang, OM,&Xiao, LL.(2020).Methylobacter accounts for strong aerobic methane oxidation in the Yellow River Delta with characteristics of a methane sink during the dry season.SCIENCE OF THE TOTAL ENVIRONMENT,704,135383. [4] Xu, HD,Zhang, YC,Li, JJ,Hao, QQ,Li, X,&Liu, FH.(2020).Heterogeneous activation of peroxymonosulfate by a biochar-supported Co3O4 composite for efficient degradation of chloramphenicols.ENVIRONMENTAL POLLUTION,257,113610. [5] Li, JJ.,Liu, FH.,Yang, CY.,Zheng, SL.,Xiao, LL.,...&Luo, YM.(2020).Inhibition effect of polyvinyl chloride on ferrihydrite reduction and electrochemical activities of Geobacter metallireducens.JOURNAL OF BASIC MICROBIOLOGY,60(1 SI),37-46. [6] 刘进超Delta,刘芳华,张月超,等. 铁锰氧化物提高巴斯德梭菌电子输出率[J]. 微生物学通报,2020,47(1):24-34. [7] Xiao, LL.,Sun, R.,Zhang, P.,Zheng, SL.,Tan, Y.,...&Liu, FH.(2019).Simultaneous intensification of direct acetate cleavage and CO2 reduction to generate methane by bioaugmentation and increased electron transfer.CHEMICAL ENGINEERING JOURNAL,378,UNSP 122229. [8] Xiao, LL.,Wei, WC.,Luo, M.,Xu, HD.,Feng, DW.,...&Liu, FH.(2019).A potential contribution of a Fe(III)-rich red clay horizon to methane release: Biogenetic magnetite-mediated methanogenesis.CATENA,181,UNSP 104081. [9] Xu, HD,Xiao, LL,Zheng, SL,Zhang, YC,Li, JJ,&Liu, FH.(2019).Reductive degradation of chloramphenicol by Geobacter metallireducens.SCIENCE CHINA-TECHNOLOGICAL SCIENCES,62(10),1688-1694. [10] Zhang, YC,Liu, FH,Xu, HD,&Xiao, LL.(2019).Extraction of electrons by magnetite and ferrihydrite from hydrogen-producing Clostridium bifermentans by strengthening the acetate production pathway.SCIENCE CHINA-TECHNOLOGICAL SCIENCES,62(10),1719-1725. [11] Yang, CY,Wei, WC,Liu, FH,&Yu, XY.(2019).Peak selection matters in principal component analysis: A case study of syntrophic microbes.BIOINTERPHASES,14(5),51004. [12] Xiao, LL,Liu, FH,Xu, HD,Feng, DW,Liu, JC,&Han, GX.(2019).Biochar promotes methane production at high acetate concentrations in anaerobic soils.ENVIRONMENTAL CHEMISTRY LETTERS,17(3),1347-1352. [13] 于士翔,纪元,李新,等. 一株单环刺螠致病弧菌的分离鉴定、生长特性研究及药敏分析[J]. 海洋科学,2019,43(07):112-121. [14] You, YS,Zheng, SL,Zang, HM,Liu, F,Liu, FH,&Liu, J.(2019).Stimulatory effect of magnetite on the syntrophic metabolism of Geobacter co-cultures: Influences of surface coating.GEOCHIMICA ET COSMOCHIMICA ACTA,256(SI),82-96. [15] Zhang, YC,Xiao, LL,Wang, SN,&Liu, FH.(2019).Stimulation of ferrihydrite nanorods on fermentative hydrogen production by Clostridium pasteurianum.BIORESOURCE TECHNOLOGY,283,308-315. [16] Wang, BC,Liu, FH,Zheng, SL,&Hao, QQ.(2019).Trophic strategy of diverse methanogens across a river-to-sea gradient.JOURNAL OF MICROBIOLOGY,57(6),470-478. [17] Li, JX,Zhang, YX,Zheng, SL,Liu, FH,&Wang, GJ.(2019).Anaerobic Bacterial Immobilization and Removal of Toxic Sb(III) Coupled With Fe(II)/Sb(III) Oxidation and Denitrification.FRONTIERS IN MICROBIOLOGY,10,360. [18] Li, Jiajia.,Xiao, Leilei.,Zheng, Shiling.,Zhang, Yuechao.,Luoc, Min.,...&Liu, Fanghua.(2018).A new insight into the strategy for methane production affected by conductive carbon cloth in wetland soil: Beneficial to acetoclastic methanogenesis instead of CO2 reduction.SCIENCE OF THE TOTAL ENVIRONMENT,643,1024-1030. [19] Zhang, Peng,Zheng, Shiling,Liu, Jia,Wang, Bingchen,Liu, Fanghua,&Feng, Yujie.(2018).Surface properties of activated sludge-derived biochar determine the facilitating effects on Geobacter co-cultures.WATER RESEARCH,142,441-451. [20] Zheng, Shiling,Liu, Fanghua,Li, Meng,Xiao, Leilei,&Wang, Oumei.(2018).Comparative transcriptomic insights into the mechanisms of electron transfer in Geobacter co-cultures with activated carbon and magnetite.SCIENCE CHINA-LIFE SCIENCES,61(7),787-798. [21] Chen, Lei.,Zhang, Peng.,Shang, Weitao.,Zhang, Hongxia.,Li, Yuntao.,...&Liu, Fanghua.(2018).Enrichment culture of electroactive microorganisms with high magnetic susceptibility enhances the performance of microbial fuel cells.BIOELECTROCHEMISTRY,121,65-73. [22] 刘进超,王欧美,李佳佳,等. 生物地球化学锰循环中的微生物胞外电子传递机制[J]. 微生物学报,2018,58(04):546-559. [23] Wang, Oumei,Zheng, Shiling,Wang, Bingchen,Wang, Wenjing,&Liu, Fanghua.(2018).Necessity of electrically conductive pili for methanogenesis with magnetite stimulation.PEERJ,6,e4541. [24] 王芙仙,郑世玲,邱浩,等. 铁还原细菌Shewanella oneidensis MR-4诱导水合氧化铁形成蓝铁矿的过程[J]. 微生物学报,2018,58(04):573-583. [25] 张月超,肖雷雷,王欧美,等. 异化铁还原梭菌Clostridium bifermentans EZ-1产氢与电化学特性[J]. 微生物学报,2018,58(04):525-537. [26] Xiao, Leilei.,Liu, Fanghua.,Liu, Jinchao.,Li, Jiajia.,Zhang, Yuechao.,...&Wang, Oumei.(2018).Nano-Fe3O4 particles accelerating electromethanogenesis on an hour-long timescale in wetland soil.ENVIRONMENTAL SCIENCE-NANO,5(2),436-445. [27] Wei, Wenchao.,Zhang, Yanyan.,Komorek, Rachel.,Plymale, Andrew.,Yu, Rujia.,...&Yu, Xiao-Ying.(2017).Characterization of syntrophic Geobacter communities using ToF-SIMS.BIOINTERPHASES,12(5),05G601. [28] Zheng, Shiling.,Wang, Bingchen.,Li, Ying.,Liu, Fanghua.,Wang, Oumei.,...&Wang, Oumei.(2017).Electrochemically active iron (III)-reducing bacteria in coastal riverine sediments.JOURNAL OF BASIC MICROBIOLOGY,57(12),1045-1054. [29] Zheng, SL,Wang, BC,Liu, FH,&Wang, OM.(2017).Magnetite production and transformation in the methanogenic consortia from coastal riverine sediments.JOURNAL OF MICROBIOLOGY,55(11),862-870. [30] Xiao Leilei.,Xie Baohua.,Liu Jinchao.,Zhang Hongxia.,Han Guangxuan.,...&Wang, OM .(2017).Stimulation of long-term ammonium nitrogen deposition on methanogenesis by Methanocellaceae in a coastal wetland.SCIENCE OF THE TOTAL ENVIRONMENT,595,337-343. [31] Wei, Wenchao.,Komorek, Rachel.,Yu, Xiaofei.,Zhang, Yanyan.,Liu, Fanghua.,...&Yu, Xiao-Ying.(2017).In situ characterization of microbial aggregates using SALVI and liquid ToF-SIMS.ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY,254. [32] 杜思瑶,于淼,刘芳华,等. 设施种植模式对土壤细菌多样性及群落结构的影响[J]. 中国生态农业学报,2017,25(11):1615-1625. [33] Chen, L,Wang, MP,Huang, L,Zhang, ZJ,Liu, FH,&Lu, GT.(2017).XC_0531 encodes a c-type cytochrome biogenesis protein and is required for pathogenesis in Xanthomonas campestris pv. campestris.BMC MICROBIOLOGY,17,142. [34] Zhang, Hongxia,Zheng, Shiling,Ding, Jiawang,Wang, Oumei,&Liu, Fanghua.(2017).Spatial variation in bacterial community in natural wetland-river-sea ecosystems.JOURNAL OF BASIC MICROBIOLOGY,57(6),536-546. [35] 张洪霞,郑世玲,魏文超,等. 水分条件对滨海芦苇湿地土壤微生物多样性的影响[J]. 海洋科学,2017,41(5):144-152. [36] 王炳臣,郑世玲,张洪霞,等. 渤海不同区域沉积物古菌的多样性分析[J]. 海洋科学,2017,41(5):8-16. [37] Chen, Lei.,Wang, Mingpeng.,Hou, Jin.,Fu, Jiafang.,Shen, Yu.,...&Bao, XM .(2017).HAL2 overexpression induces iron acquisition in bdf1 Delta cells and enhances their salt resistance.CURRENT GENETICS,63(2),229-239. [38] 刘芳华,杨翠云,肖雷雷. 加强电微生物学研究持续利用海岸带新型微生物资源[J]. 中国科学院院刊,2016,31(10):1226-1232. [39] 陈蕾,张洪霞,李莹,等. 微生物在地球化学铁循环过程中的作用[J]. 中国科学:生命科学,2016,46(9):1069-1078. [40] Yang, CY.,Fang, ST.,Chen, DH.,Wang, JH.,Liu, FH.,...&fhliu@yic.ac.cn.(2016).The possible role of bacterial' signal molecules N-acyl homoserine lactones in the formation of diatom-biofilm (Cylindrotheca sp.).MARINE POLLUTION BULLETIN,107(1),118-124. [41] 李莹,郑世玲,张洪霞,等. 产甲烷分离物中 Clostridium spp.与 Methanosarcinabarkeri 潜在的种间直接电子传递[J]. 微生物学通报,2016:13. [42] Xiao, LL,Lian, B,Dong, CL,Liu, FH,&Lian, B .(2016).The selective expression of carbonic anhydrase genes of Aspergillus nidulans in response to changes in mineral nutrition and CO2 concentration.MICROBIOLOGYOPEN,5(1),60-69. [43] 张洪霞 李莹 郑世玲 魏文超 王炳臣 刘芳华,刘芳华. 厌氧条件在不同Fe( II) 浓度测定方法中必要性的比较研究[J]. 海岸科学,2016,第3卷(第2期):57-62. [44] Sun, FF.,Zhang, XL.,Zhang, QQ.,Liu, FH.,Zhang, JP.,...&jgong@yic.ac.cn.(2015).Seagrass (Zostera marina) Colonization Promotes the Accumulation of Diazotrophic Bacteria and Alters the Relative Abundances of Specific Bacterial Lineages Involved in Benthic Carbon and Sulfur Cycling.APPLIED AND ENVIRONMENTAL MICROBIOLOGY,81(19),6901-6914. [45] Zheng, Shiling.,Zhang, Hongxia.,Li, Ying.,Zhang, Hua.,Wang, Oumei.,...&fhliu@yic.ac.cn.(2015).Co-occurrence of Methanosarcina mazei and Geobacteraceae in an iron (III)-reducing enrichment culture.FRONTIERS IN MICROBIOLOGY,6,941. [46] Liu, FH.,Rotaru, AE.,Shrestha, PM.,Malvankar, NS.,Nevin, KP.,...&Liu, FH .(2015).Magnetite compensates for the lack of a pilin-associated c-type cytochrome in extracellular electron exchange.ENVIRONMENTAL MICROBIOLOGY,17(3),648-655. [47] Chen, Shanshan.,Rotaru, Amelia-Elena.,Liu, Fanghua.,Philips, Jo.,Woodard, Trevor L..,...&Rotaru, AE .(2014).Carbon cloth stimulates direct interspecies electron transfer in syntrophic co-cultures.BIORESOURCE TECHNOLOGY,173,82-86. [48] Shrestha, Pravin Malla.,Malvankar, Nikhil S..,Werner, Jeffrey J..,Franks, Ashley E..,Elena-Rotaru, Amelia.,...&Shrestha, PM .(2014).Correlation between microbial community and granule conductivity in anaerobic bioreactors for brewery wastewater treatment.BIORESOURCE TECHNOLOGY,174,306-310. [49] Rotaru, Amelia-Elena.,Shrestha, Pravin Malla.,Liu, Fanghua.,Markovaite, Beatrice.,Chen, Shanshan.,...&Rotaru, AE .(2014).Direct Interspecies Electron Transfer between Geobacter metallireducens and Methanosarcina barkeri.APPLIED AND ENVIRONMENTAL MICROBIOLOGY,80(15),4599-4605. [50] Chen, Shanshan.,Rotaru, Amelia-Elena.,Shrestha, Pravin Malla.,Malvankar, Nikhil S..,Liu, Fanghua.,...&arotaru@microbio.umass.edu.(2014).Promoting Interspecies Electron Transfer with Biochar.SCIENTIFIC REPORTS,4,5019. [51] Rotaru, Amelia-Elena.,Shrestha, Pravin Malta.,Liu, Fanghua.,Shrestha, Minita.,Shrestha, Devesh.,...&Rotaru, AE .(2014).A new model for electron flow during anaerobic digestion: direct interspecies electron transfer to Methanosaeta for the reduction of carbon dioxide to methane.ENERGY & ENVIRONMENTAL SCIENCE,7(1),408-415. [52] Liu, Fanghua,Conrad, Ralf. Thermoanaerobacteriaceae Oxidize Acetate In Methanogenic Rice Field Soil At 50 Degrees C[J]. Environmental Microbiology,2010-01-01,12(8):2341-2354. [53] 李莹,郑世玲,张洪霞,等. 产甲烷分离物中Clostridium spp.与Methanosarcina barkeri潜在的种间直接电子传递[J]. 微生物学通报,44(3):591-600.

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