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2019
XinHY†,ZhangT†,WuYF,ZhangWL,ZhangPD,XiML*,JiangJM.AnextraordinarilystablekaryotypeofthewoodyPopulusspeciesrevealedbychromosomepainting.ThePlantJournalDOI:10.1111/tpj.14536
AlvarezJ.M,MoyanoT.C,ZhangT,GrasD.E,HerreaF.J,ArausV.O’BrienJ.A,CarrilloL,MedinaJ,Vicente-CarbajosaJ,JiangJM,GutierrezR.A*LocalchangesinchromatinaccessibilityandtranscriptionalnetworksunderlyingthenitrateresponseinArabidopsisrootsMolecularPlantDOI:10.1016/j.molp.2019.09.002
RenQR,ZhongZH,WangY,YouQ,LiQ,YuanMZ,HeY,QiCY,TangX,ZhengXL,ZhangT*,QiYP*,ZhangY*.BidirectionalpromoterbasedCRISPR-Cas9systemsforplantgenomeeditingFrontiersinPlantScienceDOI:10.3389/fpls.2019.01173
LiuXY†,SunS†,WuY,ZhouY,GuSW,YuHX,YiCD,GuMH,JiangJM,LiuB,ZhangT*,GongZY*.Dual‐coloroligo‐FISHcanrevealchromosomalvariationsandevolutioninOryzaspeciesThePlantJournalDOI:10.1111/tpj.14522
ZhongZH†,SretenovicS†,RenQR†,YangLJ,BaoY,QiCY,YuanMZ,HeY,LiuSS,WangJH,HuangL,WangY,BabyDB,WangD,ZhangT,QiYP*,ZhangY*.Improvingplantgenomeeditingwithhigh-fidelityxCas9andnon-canonicalPAM-targetingCas9-NGMolecularPlant2019,12(7):1027-1036
AlbertP.S†,ZhangT†,SemrauK,RouillardJM,KaoYH,WangCJ,DanilovaT.V,JiangJM,andBirchlerJ*.Whole-chromosomepaintsinmaizerevealrearrangements,nucleardomains,andchromosomalrelationshipsProceedingsoftheNationalAcademyofSciencesoftheUnitedStatesofAmerica2019,16(5):1679-1685
MalzahnAA†,TangX†,LeeK,RenQR,SretenovicS,ZhangYX,ChenHQ,KangMJ,BaoY,ZhengXL,DengKJ,ZhangT,SalcedoV,WangK,ZhangY*,QiYP*.ApplicationofCRISPR-Cas12atemperaturesensitivityforimprovedgenomeeditinginrice,maize,andArabidopsis.BMCBiology2019,17(1):9
TangX†,RenQR†,YangLJ,BaoY,ZhongZH,HeY,LiuSS,QiCY,LiuBL,WangY,SretenovicS,ZhangYX,ZhengXL,ZhangT*,QiYP*,ZhangY*.SingletranscriptunitCRISPR2.0systemsforrobustCas9andCas12amediatedplantgenomeediting.PlantBiotechnologyJournal2019,17(7):1431-1445
2018
WuZG†,FangDM†,YangR†,GaoF,AnXY,ZhouXX,LiYF,YiCD,ZhangT,LiangCZ,CuiP*,ChengZK*,LuoQ*.DenovogenomeassemblyofOryzagranulatarevealsrapidgenomeexpansionandadaptiveevolution.CommunicationsBiology2018,1:84
TangX†,LiuGQ†,ZhouJP†,RenQR,YouQ,TianL,XinXH,ZhongZH,LiuBL,ZhengXL,ZhangDW,MalzahnA,GongZY,QiYP*,Zhang,T*,andZhangY*.(2018).Alarge-scalewhole-genomesequencinganalysisrevealshighlyspecificgenomeeditingbybothCas9andCpf1(Cas12a)nucleasesinrice.GenomeBiology2018,19:84
YouQ,ZhongZH,RenQR,HassanF,ZhangY*,ZhangT*.CRISPRMatch:AnAutomaticCalculationAndVisualizationToolForHigh-throughputCRISPRGenome-editingDataAnalysis.InternationalJournalofBiologicalSciences2018,14(8):858-862.
YangXM†,ZhaoHN†,ZhangT,ZengZX,ZhangPD,ZhuB,HanYH,BrazGT,CaslerMD,SchmutzJ,andJiangJM*.Amplificationandadaptationofcentromericrepeatsinpolyploidswitchgrassspecies.NewPhytologist2018,218:1645-1657
HouLL†,XuM†,ZhangT†,XuZH,WangWY,ZhangJX,YuMM,JiW,ZhuCW,GongZY,GuMH,JiangJMandYuHX*.Chromosomepaintinganditsapplicationsincultivatedandwildrice.BMCPlantBiology2018,18:110.
DongZB†,YuJ†,LiH,HuangW,XuL,ZhaoY,ZhangT,XuW,JiangJM,SuZ*,andJinWW*.TranscriptionalandepigeneticadaptationofmaizechromosomesinOat-Maizeadditionlines.NucleicAcidsResearch2018,46(10):5012-5028.
ZhongZH†,ZhangYX†,YouQ†,TangX,RenQR,LiuSS,YangLJ,WangY,LiuXP,LiuBL,ZhangT,ZhengXL,LeY,ZhangY*,andQiYP*.PlantgenomeeditingusingFnCpf1andLbCpf1nucleasesatredefinedandalteredPAMsites.MolecularPlant2018,11:999-1002.
XinH†,ZhangT†,HanYH,WuYF,ShiJS,XiML*,andJiangJM.(2018)ChromosomepaintingandcomparativephysicalmappingofthesexchromosomesinPopulustomentosaandPopulusdeltoides.Chromosoma2018,127(3):313-321.
BrazGT†,HeL†,ZhaoHN†,ZhangT†,SemrauK,RouillardJM,TorresGA,JiangJM*.Comparativeoligo-FISHmapping:anefficientandpowerfulmethodologytorevealkaryotypicandchromosomalevolution.Genetics2018,208(2):513-523.
2017
ZhangR,XueC,LiuGQ,LiuXY,ZhangML,WangX,ZhangT*,andGongZY*.SegmentalDuplicationofChromosome11anditsImplicationsforCellDivisionandGenome-wideExpressioninRice.ScientificReports2017,1(7):2689.
TangX†,LowderLG†,ZhangT,MaizahnAA,ZhengXL,VoytasDF,ZhongZH,ChenYY,RenQR,LiQ,KirklandER,ZhangY*,andQiYP*.ACRISPR-Cpf1systemforefficientgenomeeditingandtranscriptionalrepressioninplants.NaturePlants2017,3:17018.
MarandAP,ZhangT,ZhuB,andJiangJM*:Towardsgenome-widepredictionandcharacterizationofenhancersinplants.BiochimicaetBiophysicaActa-GeneRegulatoryMechanisms2017,1860(1):131-139.
ZhouJP†,DengKJ†,ChengY,ZhongZH,TianL,TangX,TangAT,ZhengXL,ZhangT,QiYP*,andZhangY*:CRISPR-Cas9BasedGenomeEditingRevealsNewInsightsintoMicroRNAFunctionandRegulationinRice.FrontiersinPlantScience2017,8:1598.
2016
ZhangT,MarandA,JiangJM*:PlantDHS:ADatabaseforDNaseIHypertensiveSitesinPlants.NucleicAcidsResearch2016,44(D1):D1148-D1153.
2015
ZhangT†,ZhangWL†,andJiangJM*:Genome-widenucleosomeoccupancyandpositioningandtheirimpactongeneexpressionandevolutioninplants.PlantPhysiology2015,168(4):1406-1416.
HanYH†,ZhangT†,ThammapichaiP,WengYQ,andJiangJM*:Chromosome-specificpaintinginCucumisspeciesusingbulkedoligonucleotides.Genetics2015,200(3):771-779.
ZhuB†,ZhangWL†,ZhangT†,LiuB,JiangJM*:Genome-widepredictionandvalidationofintergenicenhancersinArabidopsisthalianausingopenchromatinsignature.ThePlantCell2015,27(9):2415-2426.
2014
ZhangT,LiGR,YangZJ,NevoE:Adaptiveevolutionofduplicatedhsp17genesinwildbarleyfrommicroclimaticallydivergentsitesofIsrael.GeneticsandMolecularResearch2014,13(1):1220-1232.
ZhangWL,ZhangT,WuYF,JiangJM:OpenChromatininPlantGenomes.CytogeneticandGenomeResearch2014(1-3),143:18-27.
YangLM†,Koo,DH†,LiD,ZhangT,JiangJM,LuanFS,RennerSS,HenaffE,SanseverinoW,Garcia-MasJ,CasacubertaJ,SenalikDA,SimonPW,ChenJF,andWengYQ:Next-generationsequencing,FISHmappingandsynteny-basedmodelingrevealmechanismsofdecreasingdysploidyinCucumis.ThePlantJournal2014,77(1):16-30.
2013
ZhangT†,TalbertPB†,ZhangWL†,WuYF,YangZJ,HenikoffJG,HenikoffS,JiangJM:TheCentOsatelliteconferstranslationalandrotationalphasingoncenH3nucleosomesinricecentromeres.ProceedingsoftheNationalAcademyofSciencesoftheUnitedStatesofAmerica2013,110(50):E4875–E4883.
Commentary:Heslop-Harrison,J.S.andSchwarzacher,T.NucleosomesandcentromericDNApackaging.ProceedingsoftheNationalAcademyofSciencesoftheUnitedStatesofAmerica2013,110(50):19974-19975.
IoveneM,ZhangT,LouQ,BuellCR,JiangJM:Copynumbervariationinpotato-anasexuallypropagatedautotetraploidspecies.ThePlantJournal2013,75(1):80-89.
WeiW,ZhangT,LinD,YangZJ,GuoFB:Transcriptionalabundanceisnotthesingleforcedrivingtheevolutionofbacterialproteins.BMCEvolutionaryBiology2013,13(1):162.
YangZJ,ZhangT,LangT,LiG,ChenG,NevoE:TranscriptomeComparativeProfilingofBarleyeibi1MutantRevealsPleiotropicEffectsofHvABCG31GeneonCuticleBiogenesisandStressResponsivePathways.InternationalJournalofMolecularSciences2013,14(10):20478-20491.
DongZB,JiangC,ChenX,ZhangT,DingL,SongW,LuoH,LaiJ,ChenH,LiuR,JinWW:MaizeLAZY1MediatesShootGravitropismandInflorescenceDevelopmentthroughRegulatingAuxinTransport,AuxinSignaling,andLightResponse.PlantPhysiology2013,163(3):1306-1322.
2012
ZhangWL†,ZhangT†,WuYF†,JiangJM:Genome-WideIdentificationofRegulatoryDNAElementsandProtein-BindingFootprintsUsingSignaturesofOpenChromatininArabidopsis.ThePlantCell2012,24(7):2719-2731.
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